1 5' 3' | 2 5' 3' | 3 5' 3' |
GACAACCTGGTCCGCAGGGGCGACACCCTCGTGCTCCTCCACGTCCGGCACCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagcttgctcgactgccttgccttgtgtactgttatgttaatagcttctcagccgctccgctgggtttttttgaatctgatgaatcgacgggcag
species | Zea mays |
transcript | GRMZM2G045278_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGC CGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACGEST: gi|50337518|gb|CO532644.1|CO532644
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGC CGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACGEST: gi|32869247|gb|CF008929.1|CF008929
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTTTGTTTCCGCACCGGATCGC CGCTGGNCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACGEST: gi|21481556|gb|BQ578239.1|BQ578239
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGC CGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACGEST: gi|101383316|gb|EB813714.1|EB813714
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGC CGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACGEST: gi|87154532|gb|DY399321.1|DY399321
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGC CGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACGEST: gi|26454905|gb|CA826488.1|CA826488
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGC CGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACGEST: gi|21329933|gb|BQ485314.1|BQ485314
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGC CGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACGEST: gi|87154904|gb|DY399693.1|DY399693
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
EST: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGC CGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
genomic: CCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagctt ... cgacgggcagCGCTGGTCCCGCTGGAGGAGCTCATGGAGCCGCCCGTGAGGCAGCGCTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAACCTGGTCCGCAGGGGCGACACCCTCGTGCTCCTCCACGTCCGGCACCACGGCCGTGAGGAGGGCAAGAACGTCCTCTGGTCCCGCACCGGATCGCgtaaaagcttgctcgactgccttgccttgtgtactgttatgttaatagcttctcagccgctccgctgggtttttttgaatctgatgaatcgacgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC