1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCCAAGGTGAACGAGGACTTCTACAAGCGGACGCTCTCCGGCGGCATCGTCACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgactctccggcggctggtagtagtcgcatttgttcttcttttcccttttttttctattgtgtggccttgttgccgcggcatggttgtggaattc...
species | Zea mays |
transcript | GRMZM2G044457_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|211345912|gb|FL043763.1|FL043763
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|28910351|gb|CB331395.1|CB331395
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|32829302|gb|CD968980.1|CD968980
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: TCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGTTACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|211345911|gb|FL043762.1|FL043762
genomic: TCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|211345907|gb|FL043758.1|FL043758
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCCTATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|149111503|gb|EE295005.2|EE295005
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|211345905|gb|FL043756.1|FL043756
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|211345906|gb|FL043757.1|FL043757
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|91873243|gb|EB403200.1|EB403200
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|211345910|gb|FL043761.1|FL043761
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|211345908|gb|FL043759.1|FL043759
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCCTATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|148944284|gb|EC889380.2|EC889380
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|50334991|gb|CO530117.1|CO530117
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|149090670|gb|EE179995.2|EE179995
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|67035454|gb|CO463987.1|CO463987
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAAEST: gi|149027104|gb|EE046395.2|EE046395
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
EST: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCA GGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
genomic: CACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgact ... atgttttcagGGTCATATTTTTATTCAGCAACAGAGACTAAGTTAGTTGTGGACACATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAAGGTGAACGAGGACTTCTACAAGCGGACGCTCTCCGGCGGCATCGTCACGCTCGTCGCCGCCGTCGTCATGCTGCTTCTCTTCATCTCCGAGACCAgtaagcgactctccggcggctggtagtagtcgcatttgttcttcttttcccttttttttctattgtgtggccttgttgccgcggcatggttgtggaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT