1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGCAGTGAAGAAAATTTGCGGGCAGCACTCAACAAAATGGGCGTTGGTGGGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAGgtactgtgcttcattgccattgtcttaacccgacggagcaatatgatatccctgaactgactgttttatgtgtcataatgaaatatacag
species | Zea mays |
transcript | GRMZM2G044317_T06 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAARAACAGGCATTACCAG GTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTEST: gi|60351451|gb|DN218424.1|DN218424
genomic: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAGgtactgtgct ... aaatatacagGTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCT
EST: AGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAG GTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTEST: gi|78021198|gb|DV489585.1|DV489585
genomic: AGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAGgtactgtgct ... aaatatacagGTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCT
EST: ACAGGCATTACCAG GTAGCTTGCACATTAACCTTGGAGGCCACACACGGTGTCTCCTGTGATTCTEST: gi|32832353|gb|CD972031.1|CD972031
genomic: ACAGGCATTACCAGgtactgtgct ... aaatatacagGTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCT
EST: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAG GTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTEST: gi|32833600|gb|CD973278.1|CD973278
genomic: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAGgtactgtgct ... aaatatacagGTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCT
EST: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAG GTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTEST: gi|32834800|gb|CD974478.1|CD974478
genomic: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAGgtactgtgct ... aaatatacagGTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCT
EST: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAG GTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTEST: gi|78088857|gb|DV517250.1|DV517250
genomic: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAGgtactgtgct ... aaatatacagGTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCT
EST: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAG GTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTEST: gi|211096944|gb|FL476439.1|FL476439
genomic: GGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAGgtactgtgct ... aaatatacagGTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCT
EST: GAAGAACAGGCATTTCCGG GTAGCTGGCACATTAACCCTTGAGGCCACACACGGTGTCTCCTGAGATTCT
genomic: GAAGAACAGGCATTACCAGgtactgtgct ... aaatatacagGTAGCTTGCACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCAGTGAAGAAAATTTGCGGGCAGCACTCAACAAAATGGGCGTTGGTGGGCATGCATTGGAAGAGGTAATGGATAAAGTGAAGAACAGGCATTACCAGgtactgtgcttcattgccattgtcttaacccgacggagcaatatgatatccctgaactgactgttttatgtgtcataatgaaatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC