Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211318724|gb|FL359237.1|FL359237EST: CAACCTCCTCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCA TGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACAAAAG
genomic: CAACCTCCTCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCAgtttgtcccc ... ccttttgtagTGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACAAAAG
EST:
gi|78089042|gb|DV517435.1|DV517435EST: CAACCTCCTCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCA TGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACAAAAG
genomic: CAACCTCCTCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCAgtttgtcccc ... ccttttgtagTGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACAAAAG
EST:
gi|148982521|gb|EE028361.2|EE028361EST: CAACCTCCTCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCA TGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACAAAAG
genomic: CAACCTCCTCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCAgtttgtcccc ... ccttttgtagTGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACAAAAG
EST:
gi|211520444|gb|FL249049.1|FL249049EST: AACCTCCNTCTGCCC-GTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCA TGTCTTTGAAGCCTGAACTTTTTGAAAGATTGAGGTTTGACTTCACAAA
genomic: AACCTCC-TCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCAgtttgtcccc ... ccttttgtagTGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGCAGACGTCAGTGGGAGAGGAGAAGAAGGAGGAGAAGGTGGACTACCTCAACCTCCTCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCTCTCAgtttgtccccttacccgtccagttttaactccataaccagctagtgcgtgtgcagtgctgcggcattgtgtagttttcactcggtatgcgctgccacgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC