1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAGCGGCAGAGCCAGGGCCCGCCGCTGCCCCGAAGTTGCAGCACGCGGCCGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAGgtgaggatcttagccatacatgctactacttcctccatagcttgcttgcgtccccgttgtttggttcagttggtcattggtatgcgtgccgccgtgttga...
species | Zea mays |
transcript | GRMZM2G043579_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAG GATTTGAATACTAAGGATTTGGAAACCAACGTCATTGTTCTTGTTCATGGTEST: gi|31664652|gb|CD573585.1|CD573585
genomic: CGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAGgtgaggatct ... tatcaaacagGATTTGAATACTAAGGATTTGGAAACCAACGTCATTGTTCTTGTTCATGGT
EST: CGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAG GATTTGAATACTAAGGATTTGGAAACCAACGTCATTGTTCTTGTTCATGGTEST: gi|91871689|gb|EB401646.1|EB401646
genomic: CGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAGgtgaggatct ... tatcaaacagGATTTGAATACTAAGGATTTGGAAACCAACGTCATTGTTCTTGTTCATGGT
EST: CGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAG GATTTGAATACTAAGGATTTGGAAACCAACGTCATTGTTCTTGTTCATGGTEST: gi|71323463|gb|DR798379.1|DR798379
genomic: CGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAGgtgaggatct ... tatcaaacagGATTTGAATACTAAGGATTTGGAAACCAACGTCATTGTTCTTGTTCATGGT
EST: CGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAG GATTTGAATACTATGGATTTGG
genomic: CGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAGgtgaggatct ... tatcaaacagGATTTGAATACTAAGGATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCGGCAGAGCCAGGGCCCGCCGCTGCCCCGAAGTTGCAGCACGCGGCCGAGGTCGCTCGCTGACCCCGAGCTCCAGCCACAGCAACTCCTAGCCAAGgtgaggatcttagccatacatgctactacttcctccatagcttgcttgcgtccccgttgtttggttcagttggtcattggtatgcgtgccgccgtgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtcccc