1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGCGCGACCGCCCCACATGGCCACCGCGCTCGGTGGGGGGCCCAACCCCACCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgcgcttcacttcatctctgcgctcgccggcggggaggggacttctgcgctctaggggctatggttgcttgcttgttgctccccctcctgcgt...
species | Zea mays |
transcript | GRMZM2G043350_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211388200|gb|FL200486.1|FL200486
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGTGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|93015970|gb|EB641490.1|EB641490
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCEST: gi|71434429|gb|DR815479.1|DR815479
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGC
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATAEST: gi|6021078|gb|AW066006.1|AW066006
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211390827|gb|FL200489.1|FL200489
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211385567|gb|FL200472.1|FL200472
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CGCCGACGCCATGGAGGTCGACCACTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211388193|gb|FL200479.1|FL200479
genomic: CGCCGACGCCATGGAGGTCGACC-CTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211388189|gb|FL200475.1|FL200475
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211388188|gb|FL200474.1|FL200474
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211390829|gb|FL200491.1|FL200491
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211388198|gb|FL200484.1|FL200484
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211388194|gb|FL200480.1|FL200480
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211388199|gb|FL200485.1|FL200485
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATAEST: gi|211388202|gb|FL200488.1|FL200488
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
EST: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAG CATGTCGCCACTATTATTGCGGGGGGTAGTGATGCAGTGACAGGCCACATA
genomic: CCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgc ... tacatgacagCATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCGACCGCCCCACATGGCCACCGCGCTCGGTGGGGGGCCCAACCCCACCGCCGACGCCATGGAGGTCGACCCTCCGCGCGCCTCCGCCGACGAGAAGgtgagtgcgcgcttcacttcatctctgcgctcgccggcggggaggggacttctgcgctctaggggctatggttgcttgcttgttgctccccctcctgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG