Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCTAACATTCCTCTTCCCCTCGCGCACCGCTCCTGAGTCCTGTCCACCCTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacctccaggctttcatcccaattaaacttcgagctgatctgacacccgttttgttgtgtggcgatgactggcag

Basic information

species Zea mays
transcript GRMZM2G043279_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74243811|gb|DT651725.1|DT651725
EST:     CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
EST: gi|37425015|gb|CF650243.1|CF650243
EST:     CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAA
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAA
EST: gi|211186249|gb|FL001313.1|FL001313
EST:     CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
EST: gi|211188653|gb|FL001327.1|FL001327
EST:     CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
EST: gi|211186247|gb|FL001311.1|FL001311
EST:     CTGCCACCGCMGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
EST: gi|29130231|gb|CB380935.1|CB380935
EST:     CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
EST: gi|211188656|gb|FL001330.1|FL001330
EST:     CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
EST: gi|71768079|gb|DR966016.1|DR966016
EST:     CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
EST: gi|211330349|gb|FL295562.1|FL295562
EST:     CTGCCACCGCCGACGCCGCGCCGCCGCAGCAACTGTCACCGTCGCTATGG                         CCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG
genomic: CTGCCACCGCCGACGCCGCGCCGCCGCAGCAATTGTCACCGTCGCTATGGgtaagccacc ... tgactggcagCCCGTATCAAGGTGCACGAGCTCCGGGGGAAGAGCAAGACGGACCTGCAGG