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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGACAGCGACGGGGAAGGCTTGAGCCTGGTCCTGTACTTCAGGGTGTCCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtttttttcaatcaatccgccatctttaatacttgcacttcctgtggtttaagtctaagggctagtttaggaacctcaatttcccatttccaaaggatttctttccatggaaaaatagaaatcttttagaaactaataacagactctttcctgacgacaacag

Basic information

species Zea mays
transcript GRMZM2G043141_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211417944|gb|FL367137.1|FL367137
EST:     CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATG                         AGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
genomic: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtt ... acgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
EST: gi|211375414|gb|FL332337.1|FL332337
EST:     CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATG                         AGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
genomic: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtt ... acgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
EST: gi|211327218|gb|FL357902.1|FL357902
EST:     CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATG                         AGGTTTTTCGAGGACGAAACCGAGAAGGTTAAAGGGTTCACGTCAGAATCC
genomic: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtt ... acgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
EST: gi|6952640|gb|AW424708.1|AW424708
EST:     CCGAATGCTACGATAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATG                         AGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
genomic: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtt ... acgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCGACAGCGACGGGGAAGGCTTGAGCCTGGTCCTGTACTTCAGGGTGTCCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtttttttcaatcaatccgccatctttaatacttgcacttcctgtggtttaagtctaagggctagtttaggaacctcaatttcccatttccaaaggatttctttccatggaaaaatagaaatcttttagaaactaataacagactctttcctgacgacaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG