1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGAGCCTTCTGAAGCCGAAGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagcccgcttctcccattctccggacccagactcaccctcgccgagtgtggactaacgaagtccaggctgtcgccctcgacctcgatgtgctgcag
species | Zea mays |
transcript | GRMZM2G042552_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCTGGGAGGCCGCCAEST: gi|76931381|gb|DV172714.1|DV172714
genomic: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagc ... tgtgctgcagATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCA
EST: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCAEST: gi|76293382|gb|DV032950.1|DV032950
genomic: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagc ... tgtgctgcagATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCA
EST: CATCGACCGGCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCAEST: gi|149039515|gb|EE046658.2|EE046658
genomic: CATCGACCGGCAGATCCGAGgcgaggcagc ... tgtgctgcagATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCA
EST: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCAEST: gi|211061419|gb|FL334691.1|FL334691
genomic: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagc ... tgtgctgcagATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCA
EST: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCAEST: gi|211354155|gb|FL091860.1|FL091860
genomic: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagc ... tgtgctgcagATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCA
EST: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCA
genomic: GCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagc ... tgtgctgcagATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGCCTTCTGAAGCCGAAGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagcccgcttctcccattctccggacccagactcaccctcgccgagtgtggactaacgaagtccaggctgtcgccctcgacctcgatgtgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT