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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACTCGAGGCTCGAGCACCTCGTCTGCTCGCCCGGCCCCTCCTATCCCTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctctcactccttcactctagcccaatccacaaaagcaattttctctcgtaaccctagattcgttttttcctccag

Basic information

species Zea mays
transcript GRMZM2G042398_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211188180|gb|FL095407.1|FL095407
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTWCAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188185|gb|FL095412.1|FL095412
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211031436|gb|FL127268.1|FL127268
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188175|gb|FL095402.1|FL095402
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGWTCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188182|gb|FL095409.1|FL095409
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188183|gb|FL095410.1|FL095410
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211185780|gb|FL095396.1|FL095396
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188173|gb|FL095400.1|FL095400
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211185783|gb|FL095399.1|FL095399
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211185782|gb|FL095398.1|FL095398
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188181|gb|FL095408.1|FL095408
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188177|gb|FL095404.1|FL095404
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATWAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTTCAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188179|gb|FL095406.1|FL095406
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188176|gb|FL095403.1|FL095403
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211188174|gb|FL095401.1|FL095401
EST:     CTCGCGCGACTGTYTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGWTCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
EST: gi|211185781|gb|FL095397.1|FL095397
EST:     CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTG                         GCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG
genomic: CTCGCGCGACTGTCTCCGCCGACGACCATAAGCCGCCTGCCTCATCGCTGgtgagctctc ... tttcctccagGCCACACAACGATCCGTGGCAAGGAAAGCACGAGGACGTACAGTAGAATTG