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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGGTAATGGAGAAGAACAAGCAGTACGTCGTTCAGCCCCCCACCGTCGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgtttgcctcttttgctgttgcgtctcgttgcgattagccaattgggttctattgcctgaagcgctgtacgatctgtttgtgcgcgcagtaat...

Basic information

species Zea mays
transcript GRMZM2G042078_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042078_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g41610.2 (Oryza sativa), 5'ss of exon 1
AGGAGGTAATGGAGAAGAACAAGCAGTACGTCGTTCAGCCCCCCACCGTCGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaacc-gtttgcctcttttgctgttgcgtctcgttgcgattagccaattgg-----gttctattgcctgaagcgctgtacgatctgtttgtgcgcgcagtaat
||||||| |||||||||||||||||| |||| || ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||  || |  |  | |    ||||| || | |   ||||  |  ||| ||||     |||   | |   |  | |   | ||||||||| |     ||      
AGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGgtgatccccggatttcacccccgctgt-gcctgttcatgcggct--ccatttggtcgctgtttcgtagttggcggtgtgttgcgatctgttggcaattgcgcg---

upper sequence: GRMZM2G042078_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S130_298V6.1 (Physcomitrella patens), 5'ss of exon 1
AGGAGGTAATGGAGAAGAACAAGCAGTACGTCGTTCAGCCCCCCACCGTCGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgt----gaaaccgtttgcctcttttgctgttgcgtctcgttgcgattagccaattgggttctattgcctgaagcgctgtacgatctgtt-tgtgcgcgcagtaat
|| |||| |||||  ||||||||||  | ||||| || ||  |||| ||||||||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||    || ||| |||  || || || |   || ||   || |  ||  |  ||     | | |||      |   |  |   | ||||   | |  ||  |   
AGCAGGTCATGGAAGAGAACAAGCAACATGTCGTCCATCCAGCCACAGTCGAGAAGTGTCAGGAGCTCTCTAAGCAACTCTTCTACACTCGCCTCGCTAGgtctgcgacaccctttctcttttctg-tacagcttcggatttctcttctctgatcttcct-tgttgatccttgtcgttcatattttgttgcctccttgcctt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211413241|gb|FL158703.1|FL158703
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|19769801|gb|BQ034522.1|BQ034522
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|19821995|gb|BQ048019.1|BQ048019
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211378417|gb|FL456646.1|FL456646
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGYTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211413240|gb|FL158702.1|FL158702
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211023808|gb|FL455121.1|FL455121
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211413233|gb|FL158695.1|FL158695
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTGCAAGC
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGT-CAAGC
EST: gi|18659223|gb|BM500223.1|BM500223
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211405571|gb|FL158655.1|FL158655
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|7844556|gb|AW787778.1|AW787778
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|33093643|gb|CF053637.1|CF053637
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|33092479|gb|CF052473.1|CF052473
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATTAGTCATTCTGGAAGGAGCTTGACTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|40302976|gb|CK347363.1|CK347363
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGACACTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|32855435|gb|CD995116.1|CD995116
EST:     GTTAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|45847897|gb|CN071840.1|CN071840
EST:     GAGAAGTGCCAGGAGCTCTCCCAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|15209055|gb|BI430939.1|BI430939
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211505554|gb|FL455492.1|FL455492
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|4647578|gb|AI622653.1|AI622653
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGAATGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|8103120|gb|AW927780.1|AW927780
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|18164507|gb|BM334346.1|BM334346
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|4834926|gb|AI670152.1|AI670152
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|76908734|gb|DV163072.1|DV163072
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211410678|gb|FL158675.1|FL158675
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211289907|gb|FL258756.1|FL258756
EST:     AGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTATACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: AGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTT-TACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|32908601|gb|CF013414.1|CF013414
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|14208376|gb|BG842054.1|BG842054
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|37379140|gb|CF626302.1|CF626302
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGACACTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|32923068|gb|CF027880.1|CF027880
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGGGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|9953217|gb|BE639800.1|BE639800
EST:     TAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211405562|gb|FL158646.1|FL158646
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|4647647|gb|AI622722.1|AI622722
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|32848723|gb|CD988404.1|CD988404
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCTTTATGAGTCATTCTGGAGGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211400470|gb|FL158615.1|FL158615
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|211505555|gb|FL455493.1|FL455493
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|32846305|gb|CD985986.1|CD985986
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|4647579|gb|AI622654.1|AI622654
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|32942935|gb|CF047754.1|CF047754
EST:     GAGAAGTACCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|60337691|gb|DN204664.1|DN204664
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|33091461|gb|CF051455.1|CF051455
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
EST: gi|71436747|gb|DR817797.1|DR817797
EST:     GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAG                         CCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA
genomic: GAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgt ... gtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGAGGTAATGGAGAAGAACAAGCAGTACGTCGTTCAGCCCCCCACCGTCGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTTTACACCCGCCTCGCAAGgtgaaaccgtttgcctcttttgctgttgcgtctcgttgcgattagccaattgggttctattgcctgaagcgctgtacgatctgtttgtgcgcgcagtaat

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC