1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCACGGCTCCCAGCCCCTGGCGGGCAGCACTCAGTCCCTGGCGGCGAGCTCGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCGgttagtattttaggagtctacaaccagcccatagattttgtgtgcgcatatacaaacactttgcatattgttcctttgtatacgtgaattccttcgtaca...
species | Zea mays |
transcript | GRMZM2G041847_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCG ATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGTEST: gi|78093399|gb|DV521773.1|DV521773
genomic: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCGgttagtattt ... ttcgctccagATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGT
EST: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCG ATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGTEST: gi|78111717|gb|DV530114.1|DV530114
genomic: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCGgttagtattt ... ttcgctccagATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGT
EST: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCG ATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGTEST: gi|78073564|gb|DV501998.1|DV501998
genomic: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCGgttagtattt ... ttcgctccagATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGT
EST: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCG ATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGTEST: gi|148959430|gb|EC905455.2|EC905455
genomic: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCGgttagtattt ... ttcgctccagATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGT
EST: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCG ATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGT
genomic: CGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCGgttagtattt ... ttcgctccagATTTCTGGTGAGAAATTTCACTCCGAAGATGGTTCAACTCTTTTTGCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACGGCTCCCAGCCCCTGGCGGGCAGCACTCAGTCCCTGGCGGCGAGCTCGTATTCCCAGACCTTGCCTCCACTTTCTGGTGGTTCTAGCAGCAATTCGgttagtattttaggagtctacaaccagcccatagattttgtgtgcgcatatacaaacactttgcatattgttcctttgtatacgtgaattccttcgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG