1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGCGGGGGAGGCGACCCTCGTGGCAGCGCTTGCGGCGGCCCAAAAGGAGAGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAGgtaacgcgtcatagatcatgtgcgctatgctgtttttagtttgcaaatttcaggctccattcagttacagttgaggcattttcctatgagacgcctaggt...
species | Zea mays |
transcript | GRMZM2G040642_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAG TGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGTEST: gi|71300453|gb|DR786286.1|DR786286
genomic: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAGgtaacgcgtc ... gtgcttgcagTGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGT
EST: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAG TGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGTEST: gi|149090347|gb|EE179653.2|EE179653
genomic: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAGgtaacgcgtc ... gtgcttgcagTGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGT
EST: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAG TGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGTEST: gi|71773683|gb|DR971580.1|DR971580
genomic: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAGgtaacgcgtc ... gtgcttgcagTGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGT
EST: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAG TGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGTEST: gi|148956420|gb|EC902241.2|EC902241
genomic: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAGgtaacgcgtc ... gtgcttgcagTGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGT
EST: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAG TGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGTEST: gi|21809918|gb|BQ668236.1|BQ668236
genomic: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAGgtaacgcgtc ... gtgcttgcagTGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGT
EST: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAG TGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGT
genomic: AGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAGgtaacgcgtc ... gtgcttgcagTGAGGATGGAAGTTTAAATTGTGGATACTCAAGCATTAGAGGCAGAAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCGGGGGAGGCGACCCTCGTGGCAGCGCTTGCGGCGGCCCAAAAGGAGAGCGAGAGGGAGAACGAGGTGGTGGCCGATGTATGCGGCGGGTGGAAGAGgtaacgcgtcatagatcatgtgcgctatgctgtttttagtttgcaaatttcaggctccattcagttacagttgaggcattttcctatgagacgcctaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA