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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGGGCAAGAAGGAAGCCGAGGCGGTGGCACCAGCGGCAGAGGAGGAGGATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgccttcgtgtgtacttttaggatatgcggtgatttgtctgctgagagaggtaaaggacgggtataggttattttattcttgtttgattgccctt...

Basic information

species Zea mays
transcript GRMZM2G040389_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558806|gb|CA831041.1|CA831041
EST:     GATGGGGTTGATGTGGCGGCTGTAGGGAAGCGTGTCATCGTCGAGGCCTC                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
genomic: GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
EST: gi|30307161|gb|CD001834.1|CD001834
EST:     GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
genomic: GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
EST: gi|5005844|gb|AI711906.1|AI711906
EST:     GATGGGGTTGATGTGGCGGCTGTAGGGAAGCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
genomic: GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
EST: gi|31558439|gb|CD527651.1|CD527651
EST:     GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
genomic: GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
EST: gi|32933702|gb|CF038514.1|CF038514
EST:     GAAGCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGTCCT
genomic: GAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
EST: gi|30307160|gb|CD001833.1|CD001833
EST:     GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
genomic: GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
EST: gi|211160438|gb|FL334312.1|FL334312
EST:     GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAG
genomic: GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAG
EST: gi|31558440|gb|CD527652.1|CD527652
EST:     GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
genomic: GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
EST: gi|91875258|gb|EB405215.1|EB405215
EST:     GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
genomic: GATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
EST: gi|166512111|gb|EG169057.1|EG169057
EST:     CGAAGTCGTGTCATCGTCGAGGCCTG                         CACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT
genomic: CGAAG-CGTGTCATCGTCGAGGCCTGgtgagtgcct ... tattctatagCACTCAGTGCAGACAGTTTAAGATCCGAGCTCAGAAGGTGAAGGAGGACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGGGGCAAGAAGGAAGCCGAGGCGGTGGCACCAGCGGCAGAGGAGGAGGATGGGGTTGATGTGGCGGCTGGAGCGAAGCGTGTCATCGTCGAGGCCTGgtgagtgccttcgtgtgtacttttaggatatgcggtgatttgtctgctgagagaggtaaaggacgggtataggttattttattcttgtttgattgccctt

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