1 5' 3' | 2 5' 3' | 3 5' 3' |
GCGTCGCCGCGCGGAAGCTCGCCAACCACGCATTCGTCCTCGGCGGCGGGCTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgtttccgctcccccaggcccgtttctctatggattcgtgtgagaaaggggatccgtgatcccacttttgggcggggtctttgatcttatgattc...
species | Zea mays |
transcript | GRMZM2G040030_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACCAATTGGAAGACCAACATGCTGACAGCEST: gi|71332001|gb|DR802895.1|DR802895
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|71448580|gb|DR829630.1|DR829630
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|211027745|gb|FL190156.1|FL190156
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACCAATTGGAAGACCAACATGCTGACAGCEST: gi|93012048|gb|EB637568.1|EB637568
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|110204646|gb|EC886543.1|EC886543
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CAAAGGGCTGGCCTTCCTCGCCGCAGT GTTTCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|71762702|gb|DR960639.1|DR960639
genomic: CAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|50328812|gb|CO523938.1|CO523938
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|21331512|gb|BQ486893.1|BQ486893
genomic: CACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|76020028|gb|DT947198.1|DT947198
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CCTTCCTCGCCGCAGT GTATCTCTGGATATGGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|78116265|gb|DV534652.1|DV534652
genomic: CCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|13149827|gb|BG320149.1|BG320149
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CCTCAAATGGCTGSCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|19822212|gb|BQ048236.1|BQ048236
genomic: CCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|148964237|gb|EE015419.2|EE015419
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|60400506|gb|DN233313.1|DN233313
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACCAATTGGAAGACCAACATGCTGACAGCEST: gi|76010700|gb|DT937870.1|DT937870
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|148972170|gb|EE023041.2|EE023041
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: AATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATGGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|148941605|gb|EC886544.2|EC886544
genomic: AATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|91053646|gb|EB164064.1|EB164064
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|67034400|gb|CO462950.1|CO462950
genomic: CCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|76011638|gb|DT938808.1|DT938808
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|76018464|gb|DT945634.1|DT945634
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACCAATTGGAAGACCAACATGCTGACAGCEST: gi|20336921|gb|BQ172551.1|BQ172551
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: TTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCTCAAATTGGAAGACCAACATGCTGACAGCEST: gi|148971030|gb|EE021866.2|EE021866
genomic: TTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|149097933|gb|EE183874.2|EE183874
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|76010827|gb|DT937997.1|DT937997
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: TTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|9254931|gb|BE345399.1|BE345399
genomic: TTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|20208279|gb|BQ134368.1|BQ134368
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|76934209|gb|DV173767.1|DV173767
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|148972171|gb|EE023042.2|EE023042
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCEST: gi|211025293|gb|FL190146.1|FL190146
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
EST: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
genomic: CTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgttt ... tccactacagGTATCTCTTGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTCGCCGCGCGGAAGCTCGCCAACCACGCATTCGTCCTCGGCGGCGGGCTGGGGTTCGGCACCTCCTTCCTCAAATGGCTGGCCTTCCTCGCCGCAGTgtgagtgtttccgctcccccaggcccgtttctctatggattcgtgtgagaaaggggatccgtgatcccacttttgggcggggtctttgatcttatgattc
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