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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGCGCCCTTCTCCGTACGGTGCAAGTTGCAGACCAAGCTTACGCCTCCCAACCCGGGCCTCCAGCGCTTGTATCTCACTTGTTTCAACGAGTTCAAGgtttgtccccaatttttgtgaacaaccgcgaatatgtggtttcgtcttcacatgcctgtagactgtagtttctatgcacatttgaaatagaaggaacgca...

Basic information

species Zea mays
transcript GRMZM2G039650_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039650_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g63820.2 (Oryza sativa), 5'ss of exon 1
CATCGCGCCCTTCTCCGTACGGTGCAAGTTGCAGACCAAGCTTACGCCTCCCAACCCGGGCCTCCAGCGCTTGTATCTCACTTGTTTCAACGAGTTCAAGgtttgtccccaatt--tttgtgaacaaccgcgaatatgtggtttcgtcttcacatgcctgtagactgtagtttctatgcacatttgaaatagaaggaacgca---
|||||||||||||||||| || |||||| | ||| ||||||| | ||||||| ||||| |||| || ||| | || |||||||| |||||||||| ||||||||| |||||     ||| | ||||| |||  || |      ||| |||   ||   | |||   |||  | | || |  | | |||    ||  |        
CATCGCGCCCTTCTCCGTGCGATGCAAGCTCCAGGCCAAGCTGATGCCTCCCCACCCGAGCCTACACCGCCTCTACCTCACTTGCTTCAACGAGTACAAGgtttgcccccacgcaatttctcaacaatcgctcatgtcca---tcg-ctttgtattagtatagctggta-ctcccattcgaaatcgaagcgaaataagttgttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149084546|gb|EE174015.2|EE174015
EST:     CCAACCCGGGCCTCCAGCGCTTGTATCTCACTTGTTTCAACGAGTTCAAG                         AGTGCTGTGGTAGTAGTTGGGGATGAGGAGCTGCACCTGGTGGCAATGCCG
genomic: CCAACCCGGGCCTCCAGCGCTTGTATCTCACTTGTTTCAACGAGTTCAAGgtttgtcccc ... ggctgtgtagAGTGCTGTGGTAGTAGTTGGGGATGAGGAGCTGCACCTGGTGGCAATGCCG