Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATCTGCGTGCCGCATCGCGCCGGGACACGGGAGACAATGGCGTTCACGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacggcgatgcttttccacactagagtaggtagagttgtgtcgttgaacccgcggctgggagcgggccagtcgagggtagatttgccccgcccg...

Basic information

species Zea mays
transcript GRMZM2G038848_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91878697|gb|EB408654.1|EB408654
EST:     GACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGCGCTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: GACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCG-GTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|211345290|gb|FL126063.1|FL126063
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|211345286|gb|FL126059.1|FL126059
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|211345287|gb|FL126060.1|FL126060
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|211345285|gb|FL126058.1|FL126058
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|30705270|gb|CD058727.1|CD058727
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|101390742|gb|EB817305.1|EB817305
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|71448245|gb|DR829295.1|DR829295
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|211345293|gb|FL126066.1|FL126066
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTSGGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|148946555|gb|EC884293.2|EC884293
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|211345288|gb|FL126061.1|FL126061
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: gi|148942779|gb|EC887806.2|EC887806
EST:     CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG                         AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG