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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGTCGTCGTCGACAACCTCGACAACGCCTCCGAGGCCGCCCTCGCCCGCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAGgtgcgcggccctacgcgtgattgcttcctacccctgccccagtgctagttccgtttctactttctagtcaggcttttttccccctgttttcctcctcggt...

Basic information

species Zea mays
transcript GRMZM2G038598_T06
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038598_T06 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g51670.2 (Oryza sativa), 5'ss of exon 1
CGTCGTCGTCGTCGACAACCTCGACAACGCCTCCGAGGCCGCCCTCGCCCGCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAGgtgcgcggccctacgcgtgattgcttcctacccctgccccagtgctagttccgtttctactttctagtcaggcttttttccccctgttttcctcctcggt
||| |||||| ||||||||||||||||||||||||||  |||| ||  |||||||   || |||||||| ||| ||| |  |||||||| ||||| ||||||   |   ||| |      |   | | ||   ||  | |  |     |     ||  | | |    |   | ||  ||       |||  |    |   
CGTTGTCGTCCTCGACAACCTCGACAACGCCTCCGAGCTCGCCATCCTCCGCGTCAGGGAACTCGCCGGACACAACGCCAACAACCTCGACTTCCGCAAGgtcttccttccttccttccttccttacttaattctctctctctctctctctacattagattctgattttgcggttccttttattaatttaacaaaacaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18173252|gb|BM348640.1|BM348640
EST:     GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAG                         GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
genomic: GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAGgtgcgcggcc ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
EST: gi|17930340|gb|BM267300.1|BM267300
EST:     GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAG                         GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
genomic: GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAGgtgcgcggcc ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
EST: gi|18169070|gb|BM338910.1|BM338910
EST:     GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAG                         GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
genomic: GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAGgtgcgcggcc ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
EST: gi|18176682|gb|BM351615.1|BM351615
EST:     GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAG                         GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
genomic: GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAGgtgcgcggcc ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
EST: gi|18172265|gb|BM347653.1|BM347653
EST:     GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAG                         GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG
genomic: GCGTCGCCGAGCTCGCCGGGCACGACGGCGCCAACCTCGTCTTCCACAAGgtgcgcggcc ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGG