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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCCTCCGAGTGCGCCTCGTCACTGGCACCGCAGAGATCTTCGGCACCGAGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaacccagctgccccatcatcctacttttgcgaccattgttcgtcggtgttgatttcagtggccgattctgtttgtttgctcag

Basic information

species Zea mays
transcript GRMZM2G038588_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038588_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g12570.1 (Oryza sativa), 5'ss of exon 1
GCCCCTCCGAGTGCGCCTCGTCACTGGCACCGCAGAGATCTTCGGCACCGAGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaacccagctgccccatc---atcctactttt-gcgaccattgttcg--tcggtgttgatttcagtggccgattctgtttg--tttgctcag--------------------------------------
|||| |||| || ||||||||| | ||||| || ||| |||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||||||||||   |||  || | ||  |   |||| || |   |||          |   ||     |  |||      ||  || | |    ||||||  |                                      
GCCCGTCCGCGTCCGCCTCGTCGCCGGCACGGCGGAGGTCTTCGGCACCGAGCTCCCCCCCGAGGGCTGGGTCCCCGTCCCGCCCCGCTCCAAGATCGCCgtaagcgcgccctcctcctcctcccacatcccacctcccgcggaggagaagagacccgccacgggattcgcc--tcgcctcggctcagctttgctgcgaccactgatttcttgccatttggtatgtttcggggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211180037|gb|FL171365.1|FL171365
EST:     AGCTGCCTCCGGAGG-CTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAV-
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060219|gb|FL171340.1|FL171340
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060225|gb|FL171346.1|FL171346
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAMCTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|76290710|gb|DV030278.1|DV030278
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|71329825|gb|DR801629.1|DR801629
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211063175|gb|FL171357.1|FL171357
EST:     ARCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGBGTGAGCGAGAKC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211057223|gb|FL171333.1|FL171333
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|50338324|gb|CO533450.1|CO533450
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211063174|gb|FL171356.1|FL171356
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|149010087|gb|EE041894.2|EE041894
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060222|gb|FL171343.1|FL171343
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|50338770|gb|CO533896.1|CO533896
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060214|gb|FL171335.1|FL171335
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|91870592|gb|EB400974.1|EB400974
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|148965177|gb|EE015986.2|EE015986
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060213|gb|FL171334.1|FL171334
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|31611805|gb|CD568427.1|CD568427
EST:     AGCTGCCTCCGGAGGGCTTGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211063171|gb|FL171353.1|FL171353
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCGAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|78122374|gb|DV540758.1|DV540758
EST:     AGCTGCCTCCGGAGGGGTGGGCCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGGGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|93014407|gb|EB639927.1|EB639927
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|71323425|gb|DR798363.1|DR798363
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|149034779|gb|EE155079.2|EE155079
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060224|gb|FL171345.1|FL171345
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGA
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGA
EST: gi|211063178|gb|FL171360.1|FL171360
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060216|gb|FL171337.1|FL171337
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211063168|gb|FL171350.1|FL171350
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211063169|gb|FL171351.1|FL171351
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGTGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|78118117|gb|DV536504.1|DV536504
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|71448836|gb|DR829886.1|DR829886
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060217|gb|FL171338.1|FL171338
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|148972546|gb|EE023508.2|EE023508
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060223|gb|FL171344.1|FL171344
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCGAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|149073621|gb|EE161923.2|EE161923
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211060226|gb|FL171347.1|FL171347
EST:     AGCTGCCTCCGGAGG-CTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGM
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|148952022|gb|EC897808.2|EC897808
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|71324528|gb|DR798965.1|DR798965
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|78075701|gb|DV504135.1|DV504135
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|71435658|gb|DR816708.1|DR816708
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|211180038|gb|FL171366.1|FL171366
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|148999970|gb|EE037045.2|EE037045
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
EST: gi|91053337|gb|EB163755.1|EB163755
EST:     AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCC                         ATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC
genomic: AGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaac ... gtttgctcagATTTTCACCTGGCACGGCGCGACGGTGGAACTGGACGGGGTGAGCGAGAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCCTCCGAGTGCGCCTCGTCACTGGCACCGCAGAGATCTTCGGCACCGAGCTGCCTCCGGAGGGCTGGGTCCCCGTCCCTCCCCGATCCAAGATCGCCgtaagcaaacccagctgccccatcatcctacttttgcgaccattgttcgtcggtgttgatttcagtggccgattctgtttgtttgctcag

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC