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CCGACTTTTACCTTCCTACCTGGTGCTGTAGCATCCGCCGCCTCCCGCAGAACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaaacccctttcacgcctttaaaggcctcctttgtactagcgaaaccacgagagaagaaacacggcgaatccctaaaccctactagggtgctt...
species | Zea mays |
transcript | GRMZM2G037683_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGA CGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGACEST: gi|211187504|gb|FL065077.1|FL065077
genomic: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaa ... ttgtgcgcagCGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
EST: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGA CGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGACEST: gi|60351616|gb|DN218589.1|DN218589
genomic: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaa ... ttgtgcgcagCGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
EST: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGA CGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGACEST: gi|76010783|gb|DT937953.1|DT937953
genomic: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaa ... ttgtgcgcagCGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
EST: GGCGTCGACCCTCGAAATCGAGGCCCGCGA CGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGACEST: gi|211187509|gb|FL065082.1|FL065082
genomic: GGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaa ... ttgtgcgcagCGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
EST: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGA CGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGACEST: gi|211028148|gb|FL321470.1|FL321470
genomic: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaa ... ttgtgcgcagCGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
EST: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGA CGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCSCTGCAGCAGACEST: gi|211187508|gb|FL065081.1|FL065081
genomic: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaa ... ttgtgcgcagCGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
EST: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGA CGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGACEST: gi|211187505|gb|FL065078.1|FL065078
genomic: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaa ... ttgtgcgcagCGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
EST: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGA CGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
genomic: AACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaa ... ttgtgcgcagCGTGGTTAAGATAGTGCTGCAGTTCTGCAAGGAGAATTCGCTGCAGCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGACTTTTACCTTCCTACCTGGTGCTGTAGCATCCGCCGCCTCCCGCAGAACCCGAAGATGGCGTCGTCGGCGTCGACCCTCGAAATCGAGGCCCGCGAgtacgtacaaacccctttcacgcctttaaaggcctcctttgtactagcgaaaccacgagagaagaaacacggcgaatccctaaaccctactagggtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaca