1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGTGGGGCTGTTCGTGGCGCTCATGTGCGTCTGCATCGTCGTCGGGCACCTCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaaccgcctcctttttttcttttccgcttttgccctgctgtgctcatgcttcgggaccttgatgttgcaatgctgtatgttgggggattgagggttaatcgtggcctttttcgacgtgcgtggctttgcag
species | Zea mays |
transcript | GRMZM2G037342_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGSGGGAAGCATTCGEST: gi|148996402|gb|EE035697.2|EE035697
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|78119306|gb|DV537690.1|DV537690
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|71315380|gb|DR794294.1|DR794294
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|76921052|gb|DV168433.1|DV168433
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|20300970|gb|BQ163913.1|BQ163913
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: CGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|71426858|gb|DR807908.1|DR807908
genomic: CGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|18964389|gb|BM660977.1|BM660977
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: CCGCGCTCTT-ATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|50328971|gb|CO524097.1|CO524097
genomic: CCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|149058822|gb|EE156843.2|EE156843
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|76912611|gb|DV164818.1|DV164818
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|149015463|gb|EE045330.2|EE045330
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCGEST: gi|148931601|gb|EC874712.2|EC874712
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
EST: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATC GGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
genomic: TCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaa ... ggctttgcagGGGCTGGGAACTGGAGCGGTCATCCTGTTCGCGTCGAGCGGGAAGCATTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGGGCTGTTCGTGGCGCTCATGTGCGTCTGCATCGTCGTCGGGCACCTCCTCGAGGAGAACCGCTGGATGAACGAGTCCATCACCGCGCTCTTCATCgtgagtccaaccgcctcctttttttcttttccgcttttgccctgctgtgctcatgcttcgggaccttgatgttgcaatgctgtatgttgggggattgagggttaatcgtggcctttttcgacgtgcgtggctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA