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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCTACTCAGATGAGAAAAGTGAGATGCAGGAACTGTCAATGGTAGCACTGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAATGGATACAAAgtaagttgtcatcagaggcggcaacggatatatcagaatgatttgttcatccagatgaaatgttacttttctgtttatttccttcggcttttttgctcgcgcatgtgcctagactgacgttgtcctctctgtgccttcag

Basic information

species Zea mays
transcript GRMZM2G037335_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037335_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 5'ss of exon 21
GCGCCTACTCAGATGAGAAAAGTGAGATGCAGGAACTGTCAATGGTAGCACTGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAATGGATACAAAgtaagttgtcatcagaggcggcaacggatatatcagaatgatttgttcatccagatgaaatgttacttttctgtttatttccttcggcttttttgctcgcgcatgtgcctagactgacgttgtcctctctgtgccttcag
| || || || ||||| |||||||||||  ||||||| || ||||| || || || || ||||||||||| |||||||||||||||||| |||| |||||||||||| |||   | |      | |   ||    || ||  |   |||   | || |  | || ||| |                                                                      
GTGCATATTCTGATGAAAAAAGTGAGATTGAGGAACTCTCCATGGTTGCGCTATCTGGATGCATTTGGTTGCAGGCTTTTGTTGTGACACTGGACACAAAgtaagttctcactcgtgcacttcatgaggat--tggattg--tgaatcactgaaatcatcttttgcttcttcag------------------------------------------------------------------

upper sequence: GRMZM2G037335_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G33340.1 (Glycine max), 5'ss of exon 24
GCGCCTACTCAGATGAGAAAAGTGAGATGCAGGAACTGTCAATGGTAGCACTGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAATGGATACAAAgtaagttgtcatcagaggcggcaacggatatatcagaatgatttgttcatccagatgaaatgttacttttctgtttatttccttcggcttttttgctcgcgcatgtgcctagactgacgttgtcctctctgtgccttcag
  |||||| |   ||| |||||||| ||| ||||  | |||||||| ||||| ||||| || || ||||| ||||||||||| || |||||||| || ||||||| | | || |   |  ||||  |||  |        | || | | || |  |  |  ||||  | | |    |  | | | |  | |  || |  |   | |    |                             
ATGCCTACGCTTTTGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTTTCCGGGTGTATATGGTTGCAGGCTTTTGTAGTAACAATGGAGACCAAgtaagctctaat-attagtagcaattgatgca--------acttctacttcgactttta--gttatatatttaaagaactacctggtgtatactgtttccatttttaataa-----------------------------

upper sequence: GRMZM2G037335_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G37090.1 (Glycine max), 5'ss of exon 24
GCGCCTACTCAGATGAGAAAAGTGAGATGCAGGAACTGTCAATGGTAGCACTGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAATGGATACAAAgtaagttgtcatcagaggcggcaacggatatatcagaatgatttgttcatccagatgaa-atgttacttttctgtttatttccttcggcttttttgctcgcgcatgtgcctagactgacgttgtcctctctgtgccttcag
  |||||| |  |||| |||||||| ||| ||||  | |||||||| ||||| ||||| || || ||| ||||||||||||| || |||||||| || ||||||| | | || |   |  || |  |||  | | |  | | || | | |  |  |    |||  | ||       ||  |  |||    | ||| |                                            
ATGCCTACGCTTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTTTCCGGGTGTATATGGATACAGGCTTTTGTAGTAACAATGGAGACCAAgtaagctctaat-attagtagctattgatgcaactg--ttacttttacttttaattagttatgaaatttaaagaactacctggttcatactgtttccgnnnnn--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4681093|gb|AI629763.1|AI629763
EST:     TGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAA-GGNATACAAA                         CTCATTCACTTGCCCGCAAATCCTTCTCATCTGGGGAAACTTTGTGGCCT
genomic: TGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAATGG-ATACAAAgtaagttgtc ... gtgccttcagCTCATTCACTTGCCCGCAAATCCTTCTCATCTGGGGAAACTTTGTGGCCT