1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactttagctacaactatgtttttcttatctttttttgaacattgtgaaccatatatctggataattttgtctatggaatcatgtaactgtttgg...
species | Zea mays |
transcript | GRMZM2G037185_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATG TACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGCEST: gi|71332942|gb|DR803495.1|DR803495
genomic: CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactt ... tcatgagtagTACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGC
EST: CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATG TACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGCEST: gi|93281779|gb|EB674043.1|EB674043
genomic: CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactt ... tcatgagtagTACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGC
EST: CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATG TACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGCEST: gi|18384443|gb|BM417642.1|BM417642
genomic: CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactt ... tcatgagtagTACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGC
EST: GAAGAGGTTAACCTTCTGGTTGGAAACGATG TACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGCEST: gi|87151920|gb|DY396709.1|DY396709
genomic: GAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactt ... tcatgagtagTACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGC
EST: GGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATG TACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGCEST: gi|22489686|gb|BU049609.1|BU049609
genomic: GGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactt ... tcatgagtagTACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGC
EST: GGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATG TACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGCEST: gi|71766016|gb|DR963953.1|DR963953
genomic: GGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactt ... tcatgagtagTACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGC
EST: CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATG TACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGC
genomic: CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactt ... tcatgagtagTACTTCGAAGGCTATGGCTTCCGTGGAAGTACTTTCGAGCAGACATATCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGGGAGTAGAAGAGGTTAACCTTCTGGTTGGAAACGATGgtaagtactttagctacaactatgtttttcttatctttttttgaacattgtgaaccatatatctggataattttgtctatggaatcatgtaactgtttgg
- - - - - AAGAGG