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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGATCCGAGGAGGACGGGACGGGATGGCGGCTTCGGCGGCGCCTGGGTCGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCGgtgagtcgcccgcccggttctctcgagcgcatgttcggctggaatgttgcgtgcgtttggtgcccgcttccttgcttggtagtctggttggtggttgtct...

Basic information

species Zea mays
transcript GRMZM2G036872_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89247360|gb|DY619146.1|DY619146
EST:     CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCG                         GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
genomic: CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCGgtgagtcgcc ... cttctggcagGTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
EST: gi|211508932|gb|FL160996.1|FL160996
EST:     CGGCTGGGAGGCAGGCGCTCGGAGTCGCGGCAGCGGCGACCGGAAACGCG                         GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
genomic: CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCGgtgagtcgcc ... cttctggcagGTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
EST: gi|149074588|gb|EE162991.2|EE162991
EST:     CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCG                         GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
genomic: CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCGgtgagtcgcc ... cttctggcagGTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
EST: gi|211508931|gb|FL160995.1|FL160995
EST:     CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCG                         GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
genomic: CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCGgtgagtcgcc ... cttctggcagGTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
EST: gi|211508933|gb|FL160997.1|FL160997
EST:     CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCG                         GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
genomic: CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCGgtgagtcgcc ... cttctggcagGTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
EST: gi|211508930|gb|FL160994.1|FL160994
EST:     CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCG                         GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG
genomic: CGGCTGGGAGGCAGGCGCGCGGAGTCGCGGCAGCGGCGACCGGAAACGCGgtgagtcgcc ... cttctggcagGTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG