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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGGCTCGCACCCCGCGCGATCGGCGCCTTGCTGGAGTTTGCCCCAGCCTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccagatcccctcttctctactagcagtactaattatttagtacgtagtacataataatatgtggtaaaatttctgctgtgtgtgtttttttctg...

Basic information

species Zea mays
transcript GRMZM2G036861_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211106359|gb|FL258168.1|FL258168
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148952455|gb|EC898280.2|EC898280
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106356|gb|FL258165.1|FL258165
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGTTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148950436|gb|EC896004.2|EC896004
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|71442819|gb|DR823869.1|DR823869
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTGCTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149088416|gb|EE177517.2|EE177517
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149096924|gb|EE182722.2|EE182722
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106357|gb|FL258166.1|FL258166
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149088025|gb|EE177228.2|EE177228
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149089246|gb|EE178450.2|EE178450
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149106625|gb|EE188518.2|EE188518
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148950790|gb|EC896395.2|EC896395
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106352|gb|FL258161.1|FL258161
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGTTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACYACYTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148951094|gb|EC896759.2|EC896759
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149111173|gb|EE294669.2|EE294669
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCAATGCTCGCCTAG                         AGGTGAAGGGATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCC
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACC-
EST: gi|211106358|gb|FL258167.1|FL258167
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149084565|gb|EE174034.2|EE174034
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|76281790|gb|DV021358.1|DV021358
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149067437|gb|EE287007.2|EE287007
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148936477|gb|EC880584.2|EC880584
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149098825|gb|EE184838.2|EE184838
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106354|gb|FL258163.1|FL258163
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAAMACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|76934911|gb|DV174083.1|DV174083
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106355|gb|FL258164.1|FL258164
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGTTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106349|gb|FL258158.1|FL258158
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148957149|gb|EC903140.2|EC903140
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106350|gb|FL258159.1|FL258159
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149071022|gb|EE159425.2|EE159425
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106353|gb|FL258162.1|FL258162
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149036977|gb|EE155215.2|EE155215
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACGGCTCGCACCCCGCGCGATCGGCGCCTTGCTGGAGTTTGCCCCAGCCTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccagatcccctcttctctactagcagtactaattatttagtacgtagtacataataatatgtggtaaaatttctgctgtgtgtgtttttttctg

- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC