Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCATGACCATCACTGTGCGACCACCACGGCACCCAGCTTTGCTTATGCAAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgctacattcatgacatttttcttgaaaacaaaagttaatttgcttgcttttaatttgactcccttccag

Basic information

species Zea mays
transcript GRMZM2G035839_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71758840|gb|DR956777.1|DR956777
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|71758789|gb|DR956726.1|DR956726
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|93017243|gb|EB642763.1|EB642763
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|71421397|gb|DR805409.1|DR805409
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|71759952|gb|DR957889.1|DR957889
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|50331161|gb|CO526287.1|CO526287
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|12047065|gb|BF729204.1|BF729204
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCCCGCGTCAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|74243447|gb|DT651361.1|DT651361
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|86467261|gb|DY233631.1|DY233631
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|76016393|gb|DT943563.1|DT943563
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|21330834|gb|BQ486215.1|BQ486215
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
EST: gi|71435302|gb|DR816352.1|DR816352
EST:     AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAG                         TGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA
genomic: AAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgc ... tcccttccagTGGGTTACATCAATCATGTGGTGGCGAAGGAAATCATCTCGCGTAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCATGACCATCACTGTGCGACCACCACGGCACCCAGCTTTGCTTATGCAAAGGAAACTGGTGAAGAAGAAGCCATCACTCCTTGCTGTAGTGGTCAAGgtaatctcgctacattcatgacatttttcttgaaaacaaaagttaatttgcttgcttttaatttgactcccttccag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC