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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCTCCGGCTCCGCCCGAGAGCCGCCTCTACGTCGGCGACCTCCTCCTCCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctctcccctcctcccctccttatgcacctagaaatttccctctaaatgttgcttgtttagttgggaatttggcagggttttgtttatttgatt...

Basic information

species Zea mays
transcript GRMZM2G034975_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211120701|gb|FL137079.1|FL137079
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121478|gb|FL137087.1|FL137087
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCCAGCA
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGC-AGCA
EST: gi|211120700|gb|FL137078.1|FL137078
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGGAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121474|gb|FL137083.1|FL137083
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211120704|gb|FL137082.1|FL137082
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121477|gb|FL137086.1|FL137086
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|86472486|gb|DY238856.1|DY238856
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211120703|gb|FL137081.1|FL137081
EST:     CC-CC--TCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|76910325|gb|DV163808.1|DV163808
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121484|gb|FL137093.1|FL137093
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211120702|gb|FL137080.1|FL137080
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121483|gb|FL137092.1|FL137092
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|76010385|gb|DT937555.1|DT937555
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|78079427|gb|DV507839.1|DV507839
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|94476849|gb|EB705807.1|EB705807
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121481|gb|FL137090.1|FL137090
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|71326147|gb|DR799760.1|DR799760
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121482|gb|FL137091.1|FL137091
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|71314223|gb|DR793729.1|DR793729
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121485|gb|FL137094.1|FL137094
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|78082089|gb|DV510501.1|DV510501
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|50325253|gb|CO520379.1|CO520379
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|76933226|gb|DV173377.1|DV173377
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|50332229|gb|CO527355.1|CO527355
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121486|gb|FL137095.1|FL137095
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: gi|211121487|gb|FL137096.1|FL137096
EST:     CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG                         TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCCTCCGGCTCCGCCCGAGAGCCGCCTCTACGTCGGCGACCTCCTCCTCCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctctcccctcctcccctccttatgcacctagaaatttccctctaaatgttgcttgtttagttgggaatttggcagggttttgtttatttgatt

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