1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCCCATCTCTATCTCTCTCCGCTGGATCCTCCGGCCTCTCGCGGTCCGGTGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggccttcctaactggaaccttggtgggttatttattcttattccatgcctctgagctgttcttgttctcagtcagatccaaattgtccttggt...
species | Zea mays |
transcript | GRMZM2G034855_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGNCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|149080157|gb|EE169175.2|EE169175
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|71416639|gb|DR803774.1|DR803774
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|91052743|gb|EB163161.1|EB163161
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|149005498|gb|EE040057.2|EE040057
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGGCGTCACCGATGCCCTCCCCTACTCEST: gi|149009874|gb|EE041740.2|EE041740
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|211392320|gb|FL031655.1|FL031655
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|149014249|gb|EE043812.2|EE043812
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|50333923|gb|CO529049.1|CO529049
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|71322787|gb|DR798079.1|DR798079
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|211392321|gb|FL031656.1|FL031656
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|148991913|gb|EE033525.2|EE033525
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|211017021|gb|FL053486.1|FL053486
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|211392317|gb|FL031652.1|FL031652
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|101387492|gb|EB815761.1|EB815761
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|37422082|gb|CF648746.1|CF648746
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|149081318|gb|EE170432.2|EE170432
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|149089067|gb|EE178232.2|EE178232
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|93014543|gb|EB640063.1|EB640063
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTCEST: gi|148945947|gb|EC891240.2|EC891240
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
EST: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCG GAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
genomic: TGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggc ... tggtctgtagGAGCAAGAAGCTGGCATCCCGCCATGTCGTCACCGATGCCCTCCCCTACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCCATCTCTATCTCTCTCCGCTGGATCCTCCGGCCTCTCGCGGTCCGGTGGAGCGGAGATCCGGCCGCTCGGGCGTCGGCTGCTTCCTCGTTCTGCCGgtgagttggccttcctaactggaaccttggtgggttatttattcttattccatgcctctgagctgttcttgttctcagtcagatccaaattgtccttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT