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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacag

Basic information

species Zea mays
transcript GRMZM2G034794_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 5'ss of exon 3
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgag--ctta-acaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacag
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||  || |||    || |  |||    |||||  ||  | || ||||| |    |    | | || ||     | | | |  ||     |    ||
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCAGTTGCTGAGGAGAGAGCTGGACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgctttt-cattaattcc----tttgttttcattggcttaatgtag

upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 5'ss of exon 3
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagt-actgatgccacatctggctcttgttactggacaacag
|||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||| | || ||||||||||| |||||||||||||||||||| ||||||   || | |    |||| |     | | || || |  |      |   || |    | | |||    |  ||| | |  ||  |  |   |||
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCAGTTGCTGAGGAGAGAGCTGGGCGCAAGTTGGGCGGACTCAGGGTGCTCAACTCCTACTGGGTGAACGAGgtacatttcactttactgagatctttcaaagatgattatcaacaatgtatctgccttccattaatg----acttggttttctttggtttaatgcag

upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgct-taattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacag
 || || || || ||| | | ||||||||||||||| |||||| | |||||| | ||| | ||||| |||||||||||||| || |||||||||||||||||||| | |  |||  |||     |   | |  |    |  | || |   || ||  | |||||| | |    |   | ||||||| |        
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctggatatgaattgctgactggttgg-actgattctattgttatgtgttgttacag--------

upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G41620.3 (Glycine max), 5'ss of exon 2
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtca-gtactgatgccacatctggctcttgttactggacaacag
||| || || || ||| | | ||||||||| ||||| |||||| | |||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||||| || |  ||||  ||     |    | ||    ||| |||||   |     ||| ||  ||||     |       ||||| |  |     |||
CCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGgtttgtt--attgtattacttctgttgaaat----tga-aatttggttgtgaatcatgtgttgatttggta---aaagcttgtcatggtgtttcag

upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA17G15230.1 (Glycine max), 5'ss of exon 3
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgctta-attgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacag
 || || || || ||  | | ||||||||||||||| |||||||| || ||| | ||| | ||||| |||||||||||||| || |||||||||||||||||||| | | ||    |||   || | ||  |    |  || ||     | ||||  || ||||| | |    |   | ||||| | |        
TCAACTGAAATTTCAACGCAGCAAGAGGTCTGTTGCCGAGGAGAGAGCCGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttaacatcacattg---ttgaaaacctggt-tatgagttgctgactttgttggt-ctgattctattgttatgtgttgttgcag--------

upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacag---------
 |||||||| |||||| | |  ||||| ||||||||||||||  | ||||| || || || || || || |||||| | |||||||||||| | |||||||||||| | |    |||     | || || |   |||  |   |  |    ||| | || |   |   ||  ||  |  || |   |  |    |         
ACAGCTCAAATTCCAGCGTAGTAAGAGATCTGTTGCTGAGGAACGTGCTGGTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcag

upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: PP1S134_151V6.1 (Physcomitrella patens), 5'ss of exon 3
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgagcttaacaagatatcatgagaattttcat---ccttgtc---agtactgatgcc-acatctggctcttgttactggacaacag
 ||||||||||||||| | ||   ||||||||||||||||||| | |||||||| || |||||||| || || || || ||||| |||||| | ||  |||||   | | |    ||   | | | |   |||     | |   ||||      ||||   |  |    |||   ||           ||     |  ||| 
GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagt-agtgactttttccgtgagagcttattgcttgcacgctcatgagttatgtctaaaacatcattgcttgcaagacagctgcattttcaaatcaca-

upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 5'ss of exon 3
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacag--------
 ||||||||||||||| | |||  | | |||||||| |||||| |||| ||| |||||||||| || ||||||||||||||||| |||||| | ||  |||| || | ||     |||    | ||| |   |   |   ||| | | |  || |  |||| ||  |   |  || | | |    |      |          
GCAGCTCAAGTTCCAGCGCAACTTGCGTTCTGTTGCGGAGGAGCGGGCAGGAAGAAAGCTTGGAGGCCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtgtgttgaaacatcttggctcttacatgg-gttccgcccattctgagcactggc--tactcatttcggttaagggtttagggtttaaggttctatttttgtg

upper sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatg-------cttaattgagttgagcttaacaagatatcatgagaattttcatcctt--gtcagtactgatgccacatctggctcttgttactggacaacag
 ||||||||||||||| | ||   ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||| | ||  |||||||       |||  | | ||       | ||   | |  | |  |||||  |  ||  |||  |    |||      |      | || |   | ||    
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50331697|gb|CO526823.1|CO526823
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|83278618|gb|DV942626.1|DV942626
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|14244396|gb|BG842379.2|BG842379
EST:     ACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: ACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|89247240|gb|DY619026.1|DY619026
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|78073803|gb|DV502237.1|DV502237
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|74245396|gb|DT653310.1|DT653310
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|113789347|gb|DW909163.1|DW909163
EST:     CTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: CTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|101384826|gb|EB814459.1|EB814459
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60357352|gb|DN224325.1|DN224325
EST:     GACGAAAGCTTGGTGGACTCAGGGTTTTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60345779|gb|DN212752.1|DN212752
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|1713336|gb|AA143931.1|AA143931
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTG
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTG
EST: gi|211043357|gb|FL434192.1|FL434192
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|211322521|gb|FL456184.1|FL456184
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|30306792|gb|CD001465.1|CD001465
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60399362|gb|DN232176.1|DN232176
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|76014099|gb|DT941269.1|DT941269
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60339194|gb|DN206167.1|DN206167
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60342479|gb|DN209452.1|DN209452
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|4647041|gb|AI622116.1|AI622116
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60349241|gb|DN216214.1|DN216214
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|4804132|gb|AI665998.1|AI665998
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|18964393|gb|BM660980.1|BM660980
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAATTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTGGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|74239605|gb|DT647519.1|DT647519
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|9254922|gb|BE345390.1|BE345390
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|148929092|gb|EC874452.2|EC874452
EST:     CTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAGTGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: CTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60397206|gb|DN230022.1|DN230022
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|33096855|gb|CF056815.1|CF056815
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60339489|gb|DN206462.1|DN206462
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|50331696|gb|CO526822.1|CO526822
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|50332713|gb|CO527839.1|CO527839
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|5739712|gb|AI947288.1|AI947288
EST:     AGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: AGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|211043356|gb|FL434191.1|FL434191
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|8665666|gb|BE186482.1|BE186482
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|50334250|gb|CO529376.1|CO529376
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA