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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAATTGATGGTGGTGGAATTTTCAAGGATTTCATGGAAAATATTACTCGAGCGGCTTTTGATGTGCAGTACGGTCTCTTCAAGgtatctttttttgggtggtctcattcatccagtgcaatgttatcattgcagcagcgaccattatttttgtgtcctaaactactaatacatgttactacct...

Basic information

species Zea mays
transcript GRMZM2G034622_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034622_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g06690.1 (Oryza sativa), 5'ss of exon 17
-------------GTTGGAATTGATGGTGGTGGAATTTTCAAGGATTTCATGGAAAATATTACTCGAGCGGCTTTTGATGTGCAGTACGGTCTCTTCAAGgtatctt-tttttgggtggtctcattcatccagtgcaatgttatcattgcagcagcgaccattatttttgtgtcctaaac-tactaatacatgttactacct--
             | ||| ||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||| |  | ||| |   || ||||| ||    || |||  | |||  |  | | | || || | | |    | || ||   | ||   |  ||||     |  
TGGTGTTGAAGAGGCTGGGATTGACGGAGGTGGAATTTTCAAGGATTTCATGGAAAATATCACTCGAGCCGCTTTTGATGTGCAGTACGGTTTATTCAAGgtatatgatcttttgtcagtttcattgatt--atgtaatagtgtca--gttgtacccactatcagtctatcatactcaatgcaatagctctagttatattttat

upper sequence: GRMZM2G034622_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G36390.1 (Glycine max), 5'ss of exon 16
-------------GTTGGAATTGATGGTGGTGGAATTTTCAAGGATTTCATGGAAAATATTACTCGAGCGGCTTTTGATGTGCAGTACGGTCTCTTCAAGgtatctttttttgggtggtctcattcatccagtgcaatgttatcattgcagcagcgaccattatttttgtgtcctaaactactaatacatgttactacct-
             | ||||||||||||||||||||| ||||| ||||||||||| || || || || || || |||||||| || || ||  | || |||||     |  |   ||| | |  || ||    | || | || |     |||||      | | | | | |     ||  |  |  |  |   | |||  | 
TGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAGgtcatagtaatattgtgctattgtttatattttacatttttttttaatcagcaaaagtaagtttatatttacatgaaggttattttctacact-ctatata

upper sequence: GRMZM2G034622_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA17G04180.1 (Glycine max), 5'ss of exon 16
-------------GTTGGAATTGATGGTGGTGGAATTTTCAAGGATTTCATGGAAAATATTACTCGAGCGGCTTTTGATGTGCAGTACGGTCTCTTCAAGgtatctttttttgggtggtctcattcatccagtgcaatgttatcattg-cagcagcgaccattatttttgtgtcctaaactactaatacatgttactacct
             | ||||||||||||||||||||| ||||| ||||||||||| || || || || || || ||||||||||| || ||  | || |||||     |  |   ||| | |  || ||    | ||      | |||  |  ||  |   || |||||        |||  |   |    ||||   |  |
TGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAATATGGATTATTTAAGgtcatagtaatattgtgctattgttaatattttacatgaaggttattttctacactgtatataattttaccacatgaaagaatccaggt-tgttgaaatat

upper sequence: GRMZM2G034622_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT3G17205.1 (Arabidopsis thaliana), 5'ss of exon 16
-------------GTTGGAATTGATGGTGGTGGAATTTTCAAGGATTTCATGGAAAATATTACTCGAGCGGCTTTTGATGTGCAGTACGGTCTCTTCAAGgtatctttttttgggtggtctcattcat-ccagtgcaatgttatcattgcagcagcgaccattatttttgtgtcctaaactactaa-tacatgttactacct-----------------
             | ||| |||||||||||||| |||||||| || |||||||| || ||||| ||||| || ||||||||||| |||||  | || |||||   | | | | | |   ||||  ||      ||     ||   | |  | |     |||| || ||||  |     ||  |||  |   | | | ||                    
CGGAGTTGAGGAAGCTGGTATTGATGGTGGTGGCATTTTCAAAGACTTCATGGAGAAAATTACCCGAGCAGCCTTTGATGTGCAATACGGGTTGTTTAAGgt-catatgtctagttttgctcacccaagtttttgtggatttgataatttaccttactccatcatctttgcatttagtacgtctatctttctctgaatattgtacatgctttctttcag

upper sequence: GRMZM2G034622_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 17
-------------GTTGGAATTGATGGTGGTGGAATTTTCAAGGATTTCATGGAAAATATTACTCGAGCGGCTTTTGATGTGCAGTACGGTCTCTTCAAGgtatctttttttgggtggtctcattcatc-cagtgcaatgttatcattgcagcagcgaccattatttttgtgtcctaaactactaatacatgttactacct-
             | ||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||  | || ||||| | |  ||||   |   | |   |||| | |||  |   | |   ||  ||  | || | ||| |    |  |  ||| |    |      |   || | 
TGGAGTTGAGGAGGCTGGTATTGATGGTGGTGGGATTTTCAAGGATTTCATGGAAAACATTACACGAGCAGCTTTTGACGTGCAGTATGGGTTGTTTAAGgt-tgtaattttctctaaacactgacatctctgtgtgagtgtgtgcatgatgctac-acaaatatatgcaggcacacaaccaaccttgttaagttgcacttc