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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctctcctgcggtgcggtgcggttcgtgcgcatcggatcgccttgtcgtctgtgggtc...

Basic information

species Zea mays
transcript GRMZM2G034083_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 1
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctct-cctgcggtgcggtgcggttc-gtgcgcatcggatcgccttgtcgtctgtgggtc-
 ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||   ||||   |  |     ||||||| | ||  || | | | ||  |  | |||  ||||   ||| | | | |||    |||   |   || | | ||  
CATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTAAGGGAGCACCTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAGgtacaccacatccatcta---cctctctgttcctcgcgcttggatcggctcgtggtttggtggaattccgcgtggatctcggcgctcggggatcggagcgtgt

upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 1
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctcttt--cccctgctcctcgctctcctgcggtgcggtg-cggttcgtgcgcatcggatcgccttgtcgtctgtgggtc
 |||||  ||||||||||| | ||||||||||||||| | || |||  ||| ||||||||| | ||||| |||||||| |||||||||  ||| || |||||   || ||| || |    ||| |||||    || || |  |   | || |    |  | || | |        ||||| |   |   |    || |     
CATGGCCAGGAAGAAGATCAGAGAGTACGACTCCAAGAGGCTTCTCAAGGATCACCTCAAGAGGCTCGCTGGCATCGATCTCCAGATCTGCTCAGCTCAGgttt-ccgctctcttcttcttccactcttggatccgtgtttttttttgtctttttctatgatgtcagcataatttcatcgaaattctacgattccttttat--

upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ37257 (Selaginella moellendorffii), 5'ss of exon 1
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctctcctgcggtgcggtgcggttcgtgcgcatcggatcgccttgtcgtctgtgggtc
 |||||  ||||||||||||| ||||| |||||||||||| | |||  | |||||||||||||  | ||  |||||||  |   | |||  ||||||||||| |   | | | | |   ||| | | ||||   |   | ||| |   ||   ||    | |  ||  |  ||    ||| |                  
CATGGCCAGGAAGAAGATCCGTGAGTATGACTCCAAGCGCTTGCTCAAGCAGCACCTCAAGCGATTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtaga--atttatttctt-gtcgtgtttttcaaat-tgcatcgttactctatcgtt---ttcttttgctttgctcttgatag------------------

upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ27687 (Selaginella moellendorffii), 5'ss of exon 1
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctctcctgcggtgcggtgcggttcgtgcgcatcggatcgccttgtcgtctgtgggtc
 |||||  ||||||||||||| |||||||||||||||||| | |||  | ||||||||||||| || ||  |||||||  |   | |||  ||||||||||| |   | | | | |  |    |     |  | || |  ||    | || || | |  |   |||| |    ||    |  | |||   |   | |   
TATGGCCAGGAAGAAGATCCGTGAGTACGACTCCAAGCGCTTGCTCAAGCAGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtaga--atttatttcttatctgta---gtgtcgtgtttttcaaattgcttcg-ttctctattgttcttttttatt--ttttctttgctcttgatag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32927225|gb|CF032037.1|CF032037
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020100|gb|FL063973.1|FL063973
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|13150055|gb|BG320377.1|BG320377
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148986293|gb|EE030028.2|EE030028
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149110454|gb|EE190425.2|EE190425
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148957836|gb|EC903982.2|EC903982
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|32849716|gb|CD989397.1|CD989397
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149070778|gb|EE159189.2|EE159189
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149000525|gb|EE037708.2|EE037708
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|37416539|gb|CF645921.1|CF645921
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|31356652|gb|CD441009.1|CD441009
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149008523|gb|EE040696.2|EE040696
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|21987306|gb|BQ778834.1|BQ778834
EST:     AGCACCTCAAGCGCCTCGCTGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020099|gb|FL063972.1|FL063972
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211133983|gb|FL063982.1|FL063982
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148947869|gb|EC893362.2|EC893362
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148958422|gb|EC904655.2|EC904655
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|31355046|gb|CD439403.1|CD439403
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|78103681|gb|DV522109.1|DV522109
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148951643|gb|EC897387.2|EC897387
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148955951|gb|EC901669.2|EC901669
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020096|gb|FL063969.1|FL063969
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|26558189|gb|CA830424.1|CA830424
EST:     CACCTCAAGCGCCTCCGGCTGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: CACCTCAAGCGCCTC-GCC-GGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211133980|gb|FL063979.1|FL063979
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149113031|gb|EE295802.2|EE295802
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020097|gb|FL063970.1|FL063970
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148935016|gb|EC879057.2|EC879057
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC