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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctctcctgcggtgcggtgcggttcgtgcgcatcggatcgccttgtcgtctgtgggtc...

Basic information

species Zea mays
transcript GRMZM2G034083_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 1
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctct-cctgcggtgcggtgcggttc-gtgcgcatcggatcgccttgtcgtctgtgggtc-
 ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||   ||||   |  |     ||||||| | ||  || | | | ||  |  | |||  ||||   ||| | | | |||    |||   |   || | | ||  
CATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTAAGGGAGCACCTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAGgtacaccacatccatcta---cctctctgttcctcgcgcttggatcggctcgtggtttggtggaattccgcgtggatctcggcgctcggggatcggagcgtgt

upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 1
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctcttt--cccctgctcctcgctctcctgcggtgcggtg-cggttcgtgcgcatcggatcgccttgtcgtctgtgggtc
 |||||  ||||||||||| | ||||||||||||||| | || |||  ||| ||||||||| | ||||| |||||||| |||||||||  ||| || |||||   || ||| || |    ||| |||||    || || |  |   | || |    |  | || | |        ||||| |   |   |    || |     
CATGGCCAGGAAGAAGATCAGAGAGTACGACTCCAAGAGGCTTCTCAAGGATCACCTCAAGAGGCTCGCTGGCATCGATCTCCAGATCTGCTCAGCTCAGgttt-ccgctctcttcttcttccactcttggatccgtgtttttttttgtctttttctatgatgtcagcataatttcatcgaaattctacgattccttttat--

upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ37257 (Selaginella moellendorffii), 5'ss of exon 1
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctctcctgcggtgcggtgcggttcgtgcgcatcggatcgccttgtcgtctgtgggtc
 |||||  ||||||||||||| ||||| |||||||||||| | |||  | |||||||||||||  | ||  |||||||  |   | |||  ||||||||||| |   | | | | |   ||| | | ||||   |   | ||| |   ||   ||    | |  ||  |  ||    ||| |                  
CATGGCCAGGAAGAAGATCCGTGAGTATGACTCCAAGCGCTTGCTCAAGCAGCACCTCAAGCGATTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtaga--atttatttctt-gtcgtgtttttcaaat-tgcatcgttactctatcgtt---ttcttttgctttgctcttgatag------------------

upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ27687 (Selaginella moellendorffii), 5'ss of exon 1
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctctcctgcggtgcggtgcggttcgtgcgcatcggatcgccttgtcgtctgtgggtc
 |||||  ||||||||||||| |||||||||||||||||| | |||  | ||||||||||||| || ||  |||||||  |   | |||  ||||||||||| |   | | | | |  |    |     |  | || |  ||    | || || | |  |   |||| |    ||    |  | |||   |   | |   
TATGGCCAGGAAGAAGATCCGTGAGTACGACTCCAAGCGCTTGCTCAAGCAGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtaga--atttatttcttatctgta---gtgtcgtgtttttcaaattgcttcg-ttctctattgttcttttttatt--ttttctttgctcttgatag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849716|gb|CD989397.1|CD989397
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|31356652|gb|CD441009.1|CD441009
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|32927225|gb|CF032037.1|CF032037
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|37416539|gb|CF645921.1|CF645921
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|26558189|gb|CA830424.1|CA830424
EST:     CACCTCAAGCGCCTCCGGCTGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: CACCTCAAGCGCCT-C-GCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|21987306|gb|BQ778834.1|BQ778834
EST:     AGCACCTCAAGCGCCTCGCTGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149008523|gb|EE040696.2|EE040696
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|67010398|gb|CO439147.1|CO439147
EST:     CTCAAGCGCCTCGCCGGCATCGACCTCCATATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: CTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149000525|gb|EE037708.2|EE037708
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020099|gb|FL063972.1|FL063972
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148951643|gb|EC897387.2|EC897387
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149110454|gb|EE190425.2|EE190425
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|78103681|gb|DV522109.1|DV522109
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020096|gb|FL063969.1|FL063969
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149070778|gb|EE159189.2|EE159189
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|13150055|gb|BG320377.1|BG320377
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211133983|gb|FL063982.1|FL063982
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148947869|gb|EC893362.2|EC893362
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020104|gb|FL063977.1|FL063977
EST:     AGCACCTCAAGCGCMTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|31355046|gb|CD439403.1|CD439403
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148935016|gb|EC879057.2|EC879057
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020100|gb|FL063973.1|FL063973
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148958422|gb|EC904655.2|EC904655
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211133980|gb|FL063979.1|FL063979
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|149113031|gb|EE295802.2|EE295802
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148955951|gb|EC901669.2|EC901669
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148957836|gb|EC903982.2|EC903982
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|211020097|gb|FL063970.1|FL063970
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
EST: gi|148986293|gb|EE030028.2|EE030028
EST:     AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAG                         GTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC
genomic: AGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 519

GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTCTCATCTATGAAGTTGGTTGTGAAACCTGACATGCTCTTTGGGAAACGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1154

GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTCTCATCTATGAAGTTGGTTGTGAAACCTGACATGCTCTTTGGGAAACGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 753

GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTCTCATCTATGAAGTTGGTTGTGAAACCTGACATGCTCTTTGGGAAACGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1406

GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccact ... ttaatcacagGTCACACAGTCAACGGATTTCACTGAGCTTGCAAACCAGGAGCCGTGGCTCTCATCTATGAAGTTGGTTGTGAAACCTGACATGCTCTTTGGGAAACGTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGGCGCGGAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCCGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCCAGATCCTCTCCGCGCAGgtcggccactcactccccagtcctctctttcccctgctcctcgctctcctgcggtgcggtgcggttcgtgcgcatcggatcgccttgtcgtctgtgggtc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctctcc