1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACTCCCGTAGGCCGTGGTGCCGCCGCCGACTGCTGGGACTGCCCTACACCAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccacccctcggtcttcgtctccccttcctgctgcgcgaaacagagcacccaaaccctaacttaccgtctgcattcggatctgatcctagtcaca...
species | Zea mays |
transcript | GRMZM2G033117_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|148949364|gb|EC894819.2|EC894819
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|211392146|gb|FL138784.1|FL138784
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGRGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGEST: gi|88755431|gb|DY539572.1|DY539572
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|149043151|gb|EE047296.2|EE047296
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|87156661|gb|DY401450.1|DY401450
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|149071591|gb|EE159982.2|EE159982
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|22935447|gb|BU571722.1|BU571722
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|211394771|gb|FL138798.1|FL138798
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|31998268|gb|CD662002.1|CD662002
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: AAGTGCCCAGGTCATCTNTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|149102652|gb|EE288009.2|EE288009
genomic: AAGTGCCCAGGTCATCT-TCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|211362524|gb|FL119618.1|FL119618
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|211394768|gb|FL138795.1|FL138795
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCNG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|78077999|gb|DV506414.1|DV506414
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|22935928|gb|BU572203.1|BU572203
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|148932942|gb|EE285770.2|EE285770
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|26560072|gb|CA832307.1|CA832307
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|149079919|gb|EE168929.2|EE168929
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|101384187|gb|EB814138.1|EB814138
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAGEST: gi|5268422|gb|AI770386.1|AI770386
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
EST: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAG GTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
genomic: CAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccac ... cttgcaacagGTGTGCCAGGTTGACCGAGCTATGGACAGCCTGTGGCATCTTGGGGACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTCCCGTAGGCCGTGGTGCCGCCGCCGACTGCTGGGACTGCCCTACACCAAGTGCCCAGGTCATCTTCGGGCCATTCGCCGGCGACGAGCACCACCAGgtacgcccacccctcggtcttcgtctccccttcctgctgcgcgaaacagagcacccaaaccctaacttaccgtctgcattcggatctgatcctagtcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacagag