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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCTCCGCCACGTCAACATCGGCGACCTCGTCCGCGAGAAGAGCCTCCACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcgcctctgcccaactgagctccgctccgctcctttcttcggatattcctctcttcgtcctatcgtgttaatctcgaccgtaatgttcagcat...

Basic information

species Zea mays
transcript GRMZM2G032699_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032699_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 1
AGGCCTCCGCCACGTCAACATCGGCGACCTCGTCCGCGAGAAGAGCCTCCACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaa-gtctcgcctctgcccaactgagctccgctccgctcctttcttcggatattcctctcttcgtcctatcgtgttaatctcgaccgtaatgttcagcat--
 | |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||  || |||||||||||  ||||||||||||||||||||    | ||||    | |   |     ||  |||  |||     ||   | |||   ||| | | |       |  || |  | | | |   | ||  |  
GGACCTCCGCCACATCAACATCGGGGACCTCGTCCGCGAGAAGAGCCTCCATGACGGCTGGGACGAGGAGCTCGAGTGCCACATCATCAACGAGGACCTGgtattagcccgccctaccgcgcatctctcccaatccaatccaaatctc---tgttcgattctgcattccgaacaatctatattcatcattagccttagatttt

upper sequence: GRMZM2G032699_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 1
AGGCCTCCGCCACGTCAACATCGGCGACCTCGTCCGCGAGAAGAGCCTCCACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcgcctctgcccaactgagctccgctccgctcctttcttcggatattcc-tctcttcgtcctatcgtgttaatctcgaccgtaatgttcagcat
    ||||| ||| | ||||||||||| |||||| | ||||||| | | |||||||| ||||||| | |  |||| |||||  ||||||||||||||||||||   ||  ||    | |   |  | | |||  | |    |  |   || |||   | |  |  |  | || |  |  ||| | | |  |     | | |
CCAGCTCCGTCACATTAACATCGGCGAACTCGTCAGAGAGAAGAACTTGCACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTGgtac-ccttaccctaactcccgttcggttcgccacacggtgtgataaagaaattttgttttcttttgttttcctagttttcttggcagccaaccggatcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733393|gb|BE512250.1|BE512250
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|5525640|gb|AI861533.1|AI861533
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|37387580|gb|CF630987.1|CF630987
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|211455241|gb|FK989201.1|FK989201
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|6194875|gb|AW146979.1|AW146979
EST:     CAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: CAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|6695878|gb|AW288986.1|AW288986
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|60341109|gb|DN208082.1|DN208082
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|40335831|gb|CK369901.1|CK369901
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|60359354|gb|DN226327.1|DN226327
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|6056726|gb|AW091131.1|AW091131
EST:     GACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: GACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|60358371|gb|DN225344.1|DN225344
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT