ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GAAACAGCGGCCGGCGGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccggcgcttcgcactcgcatggtcgattgatcgctcgttgtttctgttcgtgcgggttgtggaaataggattcccgctgatttgtttatgttgttgattag

Basic information

species	Zea mays
transcript	GRMZM2G032564_T01
intron #	1
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 1

GAAACAGCGGCCGGCGGCAAA-ATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaa---gaccggcgcttcgc-actcgcatggtcgattg-atcgctcgttgtttctgttcgtgcgg-gttgtggaaataggattcccgctgatttgtttatgttgttgattag------------------------------
  | |     ||   | | || ||||||||||| ||||||||||| ||||| |||||||| ||||| || ||||| ||   | | || ||||| |||||||||||    | |    | || |   |         ||| | | |  |  |||||| ||||  ||    ||| |  ||| |   ||   | | |||  ||  |  || ||  ||                               
-GAGCGTGATCCATTGACGAAGATGGTGCAGCGTCTCACCTACCGCAAGCGGCACAGCTATGCCACCAAGTCCAACCAACACAGGGTCGTCAAAACCCCTGgtaatcaaatccctccctcactgattatgcttcggatcggaacaatttttgtttttgtttttgttttgttttaaaaaaaaagtttttggt-attaattggttctgctgggtacgtcttgtttggttctgtgggaataatgcag

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G41280.1 (Glycine max), 5'ss of exon 1

-GAAACAGCGGCCGGCGGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaag-accggcgcttcgcac---tcgcatggtcgattgatc---------gctcgttgt--ttctgt----tcgtgcgggttgtggaaataggattcccgctgatttgtttatg-ttgttgattag--
 |||  ||| |   | |  || ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| |||  | | || |||||||| || |||||  |    | |||||| |   || ||| |||| ||  ||         || ||||||  || ||      || | ||| |    |||||    |     ||    |||  || ||||||| |    
GGAAGAAGCTGATCG-GAGAAGATGGTGCAGCGTCTCACCTACCGCAAGCGCCACAGCTATGCCACCAAATCCAACCAGCACAGAGTCGTCAAGACTCCCGgtaaataaactctcttcgctcgcctcacatcgtcgtttattctcactcacggcgcgttgtcgttttgcgccgccgcgagggctccaaaaatata--ttttaatgtgcggttgctgattgttgaatgcag

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA18G49340.1 (Glycine max), 5'ss of exon 1

GAAACAGCGGCCGGCGGCAA-AATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccg------gcgcttcgcactcgcatggtcgattgatcgctc---gttgtttctgttcgtgcgggttgtggaaataggattcccgctgatttgtttatgttgttgattag----------------------------------------------------------------
   ||  |   |  | ||||  ||||||||| ||||||| || || |||||||| ||||| || || |||||||| |||  ||| || || |||||||||||||            |  |||   | | |  | ||   |    | |||    ||||   | ||  |     |  |   | |  |||  |   |   ||  ||  ||||| |   |                                                                 
--CACTCCCATCAACAGCAACGATGGTGCAGAGGCTCACTTATCGCAAGCGCCATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcctctttgttctttttatttgttttgtgtttccccccctcctaattgtggttttttttattactattattattttgatctcaattatattccttcagttgtcgtcaaaatttgatttcgttgttgttgtttgatgtttttactatttttttttcaaatgggtatgtctcagg

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA18G14980.1 (Glycine max), 5'ss of exon 1

-GAAACAGCGGCCGGCGGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccggcgcttcgcact-cgcatggtcgattgatc--gctcgttgtttct-gttcgtgcgg-----gttgtggaaataggattcccgctgatttgtttatgttgttgattag--
 |||  ||| |    ||  || ||||||||||| ||||||||||| || ||||||||||| || || |||||||| |||  | | || |||||||| || ||||| || | |    | | || ||||| |||| ||  ||   ||| | |  | | ||| | || |     ||| |  ||||||  |      ||   ||  |  |||||||| |    
GGAAGAAGCTGATC-CGAGAAGATGGTGCAGCGTCTCACCTACCGCAAACGCCACAGCTATGCTACCAAATCCAACCAGCACAGAGTCGTCAAGACTCCCGgtaa-actgtcttcgctcgcttcgcatcgtcgtttattctcactcatggcgtgtcgtttgcgccgcgagtgttctaaaaatagactgtaatgtgcggtggctg-gttgttgaatgcag

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G11920.1 (Glycine max), 5'ss of exon 1

GAAACAGCGGCCGGCGGCAAA-ATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaa--gaccggcgcttcgcactcgcatggtcgattgatcgctcgttgtttctgttcgtgcgggttgtggaaataggattcccgctgatttgtttatgttgttgattag------------------------------
  | |     ||   | | || ||||||||||| ||||||||||| ||| | |||||||| ||||| |||||||| ||   | | || ||||| |||||||||||   |    | ||||| |  | |    || | |  ||| |  | | |||   |||      || | |   |   |||   | | |||  ||  |  ||  |  ||                               
-GAGCGTGATCCATTGACGAAGATGGTGCAGCGTCTCACCTACCGCAAGAGGCACAGCTATGCCACCAAATCCAACCAACACAGGGTCGTCAAAACCCCTGgtaatcaaatccctcttcggaacccctcactc-actcttcgattat-gcttcgaatcggaacaatttttgctttttaattttgggt-attaattggttctgacgggtatgttgtgtttggtgatgtgggaataatgcag

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S57_72V6.1 (Physcomitrella patens), 5'ss of exon 1

--GAAACAGCGGCCGGCGGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaaga----ccggcgcttcgcactcgc-----------------atggtcgattgatcgctcgtt-gtttctgttcgt-gcgggtt----gtggaaataggattcccgctgatttgtttatgttgttgat-tag
   || |   || |  || ||  ||||||||||| || || || |||   |||||| |||||||||| || ||||| |||||||| || |||||||||||||||  ||     |  | | |||| |||||                  | | |  | |||| | | |  |||| || | || |||  |     ||||| | |   |  | |  |  || | |  |||||  |  |||
GAAAAGCGAAGGTC--CGTCACTATGGTGCAGCGACTGACGTATCGGCGTCGCCACTGCTACGCCACTAAGTCCAACCAGACCCGTGTTGTCAAGACCCCTGgtgcgaacactcatcccctcgctctcgccactcttttaggtcattgttgcccttggatctcccctgagtttgtgcttgttgcgactcatcggtggagaaaaattggctgaagggttctctg-gttgtgtacgtag

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S39_364V6.1 (Physcomitrella patens), 5'ss of exon 1

--GAAACAGCGGCCGGCGGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccggcgcttcgcactcgcatggtcgattgatcgctcgttgtttctgttcgtgcgggttgtggaaataggattcccgctg--atttgtttatgttgttgattag
      | | || |  |  ||  ||||| |||||  | ||||||||    || ||| |||||||| | || ||||||||||||||||||||||| ||||||||| ||      |||||     ||  || |     | ||   |     |  | |  |      |  |||     | ||| | | |   | ||||| | | | | |     
CCTTCGCCGAGGTCTTC--CATCATGGTTCAGCGATTGACCTACCGTCGTCGTCACTGCTACGCCTCCAAGTCCAATCAGACCCGCGTGGTCAAAACCCCTGgttagttttttgcttcatttccgtgtgattttcaggtcaaaca--agtattatcagcttttctaatggt--cggcattgctgttagaacttgttgaggatatgg-----

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S76_47V6.1 (Physcomitrella patens), 5'ss of exon 1

GAAACAGCGGCCGGCGGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccggcgcttcgcactcgcatggt---cgattgatcgctcgttgtttctgttcgtgcgggttgtggaaataggattcccgctgatttgtttatgttgttgattag-------------------------------------------------
      | |   || | ||  |||||||||||  | |||||| ||  ||||||| |||| ||||| |||||||| ||||| || |||||||||||||||||| |||    | |  |   |||     ||   || || |    |  |        |    ||   ||  ||  |   || | |    |||  |    | || | ||  |                                                  
TGTGTGGGGTGGGGTGACACCATGGTGCAGCGTTTGACCTACAGGCGGCGCCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtctctcccccttctcttccagtgcacgttttaggagttttaccccgcatcgaagctttttacggtgaattgaatgcaagggatgaggcgttattatggaccaatcgagagttgatgtctggattgagctttgcgttgttttgtgggatatag

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S2_268V6.1 (Physcomitrella patens), 5'ss of exon 1

GAAACAGCGGCCGGCGGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaaga----ccggcgcttcgcactcgca-------tggtcgattgatcgctc--gttgtttct---gttcgtgcgggttgtggaaataggattcccgctgatttgtttatg---ttgttgattag--------
                     |||||||||||  | || || |||   |||||| |||||||||| || ||||| |||||||| || |||||||||||||||   |     |  | | |||| |||||        | |   |||| |  |    ||| |  |    ||  || |  |||| |       | |        ||| | | | |   | | || ||          
---------------------ATGGTGCAGCGATTGACGTATCGGCGTCGCCACTGCTACGCCACTAAGTCCAACCAGACCCGTGTTGTCAAGACCCCTGgtgcaaacactcatcccctcgctctcgccactcttttaggtcattgttgccctaggttctcccctgagtctgtacttgttgcgacgcatcggtggagagcaattggctgaagggttcgctggttgtgtacgtag

upper sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S200_25V6.1 (Physcomitrella patens), 5'ss of exon 1

GAAACAGCGGCCGGC--GGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccggcgcttcgcactcgcatggtcgattgatcgctcgttgtttctgttcgtgcgggttgtggaaataggattcccgctgatttgtttatgttgttgattag
     | |  | ||   | ||  ||||| |||||  | || |||||    |||||| |||| ||||| || || || ||||||||||||||||||||||| ||||  || |   |||| | ||| | | ||||   ||    ||   | | | | |  | ||| ||    |  | ||  ||  | |     ||||  |      |||  
--GCTATCTCCTGGTCTGTCACCATGGTTCAGCGATTAACGTACCGTCGCCGCCACTGCTATGCCACCAAGTCGAACCAGACCCGCGTGGTCAAGACCCCAGgtac-actgc--cttccctctctctttgtcg--cgaattttctaggctacggat--ttcggcttagatatttcggcatcgtgttttggggtttggggccagcattgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|60394221|gb|DN227091.1|DN227091

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|31612238|gb|CD568860.1|CD568860

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|31909205|gb|CD650802.1|CD650802

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211530948|gb|FL194461.1|FL194461

EST:     ACAGCTACGCCACAAAATCCAATCACACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGA--SSACCGAAAT
genomic: ACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211530949|gb|FL194462.1|FL194462

EST:     ACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTTTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: ACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|6031638|gb|AI668539.2|AI668539

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211336153|gb|FL024907.1|FL024907

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|40337269|gb|CK371339.1|CK371339

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|9952149|gb|BE638732.1|BE638732

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|15589577|gb|BI674193.1|BI674193

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGC-TGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211336147|gb|FL024901.1|FL024901

EST:     CCACATCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211093531|gb|FL210138.1|FL210138

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|60399809|gb|DN232619.1|DN232619

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|13558941|gb|BG550296.1|BG550296

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211440905|gb|FL024919.1|FL024919

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGA-SSSACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211440896|gb|FL024910.1|FL024910

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAN-GTACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|28910208|gb|CB331322.1|CB331322

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|31250297|gb|CD219321.1|CD219321

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|5398743|gb|AI812208.1|AI812208

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211440908|gb|FL024922.1|FL024922

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211440907|gb|FL024921.1|FL024921

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGA
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGA

EST: gi|31909207|gb|CD650803.1|CD650803

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|5439254|gb|AI820175.1|AI820175

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|60397292|gb|DN230108.1|DN230108

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211440906|gb|FL024920.1|FL024920

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|16378357|gb|BI992402.1|BI992402

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|40336063|gb|CK370133.1|CK370133

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGACAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAGGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|45846863|gb|CN070806.1|CN070806

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211443031|gb|FL024931.1|FL024931

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|60342507|gb|DN209480.1|DN209480

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|28568995|gb|CB280870.1|CB280870

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211443025|gb|FL024925.1|FL024925

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211440894|gb|FL024908.1|FL024908

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211530950|gb|FL194463.1|FL194463

EST:     ACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: ACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|78027039|gb|DV495426.1|DV495426

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

EST: gi|211443023|gb|FL024923.1|FL024923

EST:     CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTG                         GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT
genomic: CCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 399

GAAACAGCGGCCGGCGGCAAAATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccgg ... tgttgattagGTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 637

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 626