1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAGCCCATCTCACAGCCCCGCAGCCTCTTCTCCTCGTCCATCTCTTCCGCCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttctacgaacccctactcccattggtttacgctggtttgtccccctcccaggcgtctgaggtctccgatctggtgatctgctctagtctccggta...
species | Zea mays |
transcript | GRMZM2G032367_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|148953376|gb|EE152870.2|EE152870
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|6127287|gb|AW129812.1|AW129812
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|30705068|gb|CD058657.1|CD058657
genomic: CTCCCCGCGCCGCCGTTCGCCGAAG--CC-C--CGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGGAAGGAAAATEST: gi|101393982|gb|EB818924.1|EB818924
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCT-GAA-GAGAAT
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|88757330|gb|DY541471.1|DY541471
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTTEST: gi|91878167|gb|EB408124.1|EB408124
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|32907328|gb|CF012141.1|CF012141
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTCG CEST: gi|32907328|gb|CF012141.1|CF012141
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcag-
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTCG CEST: gi|91048031|gb|EB158449.1|EB158449
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcag-
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|60359697|gb|DN226670.1|DN226670
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|76020657|gb|DT947827.1|DT947827
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|71327453|gb|DR800341.1|DR800341
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|71448913|gb|DR829963.1|DR829963
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|50338207|gb|CO533333.1|CO533333
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|149084255|gb|EE173682.2|EE173682
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|149110785|gb|EE190606.2|EE190606
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAG AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCEST: gi|37420962|gb|CF648177.1|CF648177
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
EST: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAA AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
genomic: CCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttcta ... caatttgcagAGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCCCATCTCACAGCCCCGCAGCCTCTTCTCCTCGTCCATCTCTTCCGCCTCCCTCCCCGCGCCGCCGTTCGCCGAAGCCCCGCGTCGCGTCGCGTAGgtaacttctacgaacccctactcccattggtttacgctggtttgtccccctcccaggcgtctgaggtctccgatctggtgatctgctctagtctccggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc