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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACAGGTTTGCTCGTGAGACTGGATGAGCGCAGCAGGGCCGCGGACTCGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAGgtccgtccgttcgctccccgctcccaaatcaaatcttactgcgaaaaaaaaaatctgccactgtacacttccctctgtttttttcgctagccgttcctct...

Basic information

species Zea mays
transcript GRMZM2G032337_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032337_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g08950.1 (Oryza sativa), 5'ss of exon 2
GTTTACAGGTTTGCTCGTGAGACTGGATGAGCGCAGCAGGGCCGCG---GACTCGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAGgtccgtccgttcgctccccgctcccaaatcaaatcttactgcgaaaaaaaaaatctgccactgtacacttccctctgtttttttcgctagccgttcctct--
      |||       ||| || |||| ||| | |||   || |||   |||||||| |  || ||||||||||| |||||||| ||||||||||||||||||||| ||    ||  |  |  ||      ||   | ||   ||  |      | |        |    ||   |  || |      || |    || |     
---AGGAGGAGGAGCGGTGGGATTGGAGGAGAGGAGCGACGCGGCGGAGGACTCGCTGGTGTCGGTGCTCGCCGTGTACGACGGCTTCTGCAACCTCAAGCAGgtcagtgatctccgtttcttcttgtgcttctgcttttttcgc--atcggttacttctttctcgcctcctattcaatggtggcggtgcaacttttttcctcgc

upper sequence: GRMZM2G032337_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G38770.1 (Glycine max), 5'ss of exon 2
GTTTACAGGTTTGCTCGTGAGACTGGATGAGCGCAGCAGGGCCGCGGACTCGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAGgtccgtccgttcgctccccgctcccaaatcaaatcttact--------gcgaaaaaaa-aaatctgccactg-tacacttccctctgtttttttcgctagccgttcctct-----------
                  |  || |  |    |          | | |  |  |||  ||||| |||||||||||||| |||||||||||||| || ||||| | |   |||| |   |||    |  |    ||    |        ||||||  ||  |  | |||  |  | |  || ||  |       ||  || | |||  | |           
----------------AGGGAACGGCGTCGCTGTTATCTC-TTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAGgttccttt-ttcgtttttcgccgttattttttttccgtttcgagccacgcgaaatgaatgagccagccgttactgcgttttccatttccaaaatctgtaacggtttttgtttcccattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469754|gb|DY236124.1|DY236124
EST:     CGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAG                         ATTAATTTGGAGCTCAAGGTCTGTGGAGGGTCATCTATCCGGAAAACTCTG
genomic: CGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAGgtccgtccgt ... gtattcacagATTAATTTGGAGCTCAAGGTCTGTGGAGGGTCATCTATCCGGAAAACTCTG
EST: gi|76909164|gb|DV163254.1|DV163254
EST:     CGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAG                         ATTAATTTGGAGCTCAAGGTCTGTGGAGGGTCATCTATCCGGAAAACTCTG
genomic: CGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAGgtccgtccgt ... gtattcacagATTAATTTGGAGCTCAAGGTCTGTGGAGGGTCATCTATCCGGAAAACTCTG