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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCAGCGGCCGTTGACCCTGTGGAACCGGAGAAGGTTCTCAAGGCGGCCGGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccatattcttccatctgtttattcgctaagttcccttctttgctagcgtttgaacgttctgagcagtggtgctgaactagggatacagatttaaa...

Basic information

species Zea mays
transcript GRMZM2G031825_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031825_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g21460.1 (Oryza sativa), 5'ss of exon 2
AGGCAGCGGCCGTTGACCCTGTGGAACCGGAGAAGGTTCTCAAGGCGGCCGGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtatac--catattcttccatct-gtttattcgc---taagttcccttctt-tgctagcgtttgaacgttctgagcagtggtgctgaactagggatacagatttaaa
 ||| |||||||| ||||| ||||| ||||||||||| ||   ||||||||  |||||||||| |  | |||||||||| ||||||||||| || |||||||   |  | || || ||| ||| ||||| |       || ||||   |   || | || ||  |  |||     |  |||     ||  || | |        || 
CGGCGGCGGCCGTCGACCCCGTGGAGCCGGAGAAGGTGCTTGCGGCGGCCGCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcctagtcctccttctagtttagttatggaaaaattccgcccaaatgttggccttccagagtttc---ctatgggatgcaatcagtgctgtg---ccaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352510|gb|DN219483.1|DN219483
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211295987|gb|FL012313.1|FL012313
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|34391313|gb|CF384541.1|CF384541
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|51592666|gb|CV071812.1|CV071812
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATTNNCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|32803246|gb|CD955482.1|CD955482
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA