1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAAGGGGCAACGGCACACCCACCAACTGACCTGACCCACGAGGGATCCGCAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatcagcccgcatcgcttgttttcactactctttcagttgttcgtttcaaatcgttggattcttgattgctatttgtttcttccgttcgaag
species | Zea mays |
transcript | GRMZM2G031825_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211282892|gb|FL423639.1|FL423639
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211276907|gb|FL386582.1|FL386582
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211487768|gb|FL393005.1|FL393005
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211436196|gb|FL370281.1|FL370281
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211112220|gb|FL429165.1|FL429165
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211201689|gb|FL384215.1|FL384215
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211251969|gb|FL399229.1|FL399229
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211539553|gb|FL409993.1|FL409993
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|32910784|gb|CF015596.1|CF015596
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAAGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211133046|gb|FL407432.1|FL407432
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211445202|gb|FL371167.1|FL371167
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211451679|gb|FL376124.1|FL376124
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211520775|gb|FL373480.1|FL373480
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211262121|gb|FL420560.1|FL420560
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211143159|gb|FL403015.1|FL403015
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACC-TGTGGAACCEST: gi|211265984|gb|FL369214.1|FL369214
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAAGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|32910981|gb|CF015793.1|CF015793
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAAGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211497290|gb|FL426479.1|FL426479
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211231771|gb|FL389681.1|FL389681
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211090884|gb|FL430012.1|FL430012
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211108385|gb|FL394493.1|FL394493
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211529760|gb|FL372707.1|FL372707
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACCEST: gi|211464411|gb|FL419842.1|FL419842
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCGTTGACCCTGTGGAACC
EST: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTT AATCGTGGACGAGAGCACCAAGAAGGMAGCGGCCGTTTGACCCTGTGGAAC
genomic: CAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatca ... ccgttcgaagAATCGTGGACGAGAGCACCAAGAAGGCAGCGGCCG-TTGACCCTGTGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGGGGCAACGGCACACCCACCAACTGACCTGACCCACGAGGGATCCGCAGATGAAGATCATTCCGGTCCCTTGCCTGGATGACAACTATGCCTACTTgtacgaatcagcccgcatcgcttgttttcactactctttcagttgttcgtttcaaatcgttggattcttgattgctatttgtttcttccgttcgaag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA