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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCCTTGTGCGCTACCGCTCCTCTCCCTTGGCAACGACGACTGGCGCCGCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccatcctctactcccttaatgctgtgcgaaaccgaggacccaatgaccctaacttaagctatttggctatttttattcggatccgatctaattacgagtgcaacag

Basic information

species Zea mays
transcript GRMZM2G031625_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18167184|gb|BM337023.1|BM337023
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211321863|gb|FL418305.1|FL418305
EST:     G-CGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGARCGCGCGTGGGT
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGG-CGCGCGTGGGT
EST: gi|211111995|gb|FL388639.1|FL388639
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG