Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCCTTGTGCGCTACCGCTCCTCTCCCTTGGCAACGACGACTGGCGCCGCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccatcctctactcccttaatgctgtgcgaaaccgaggacccaatgaccctaacttaagctatttggctatttttattcggatccgatctaattacgagtgcaacag

Basic information

species Zea mays
transcript GRMZM2G031625_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211313582|gb|FL415815.1|FL415815
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211112897|gb|FL386070.1|FL386070
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211305688|gb|FL424514.1|FL424514
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211315265|gb|FL392917.1|FL392917
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211341305|gb|FL394251.1|FL394251
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211447311|gb|FL370712.1|FL370712
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211439708|gb|FL416905.1|FL416905
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|78179236|gb|DV549609.1|DV549609
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211529790|gb|FL373531.1|FL373531
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211212468|gb|FL408351.1|FL408351
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211029397|gb|FL376211.1|FL376211
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|78026767|gb|DV495154.1|DV495154
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211214751|gb|FL397478.1|FL397478
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211042824|gb|FL411663.1|FL411663
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211341415|gb|FL403599.1|FL403599
EST:     GCCGCTGCCAGATTTCGCTGGGCATCTCGCCGGCGACRAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211030484|gb|FL428665.1|FL428665
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211154631|gb|FL370441.1|FL370441
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211451638|gb|FL374390.1|FL374390
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCRCCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211321863|gb|FL418305.1|FL418305
EST:     G-CGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGARCGCGCGTGGGT
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGG-CGCGCGTGGGT
EST: gi|16918950|gb|BM073966.1|BM073966
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211364209|gb|FL423704.1|FL423704
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211216825|gb|FL370061.1|FL370061
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211364309|gb|FL429334.1|FL429334
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211147223|gb|FL386485.1|FL386485
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211392704|gb|FL395243.1|FL395243
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211221220|gb|FL370906.1|FL370906
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211298864|gb|FL392435.1|FL392435
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211334456|gb|FL398399.1|FL398399
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|12046372|gb|BF728511.1|BF728511
EST:     TGCCAGACTTCCCTGGGCATCTCGCCGGCGACGAGCTCCCCCCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: TGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|18163806|gb|BM333645.1|BM333645
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211526934|gb|FL381038.1|FL381038
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211022661|gb|FL411191.1|FL411191
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGTCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211099727|gb|FL381200.1|FL381200
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211397968|gb|FL395725.1|FL395725
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211259828|gb|FL427119.1|FL427119
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|18170008|gb|BM339848.1|BM339848
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211346062|gb|FL392061.1|FL392061
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|18162918|gb|BM332757.1|BM332757
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211194230|gb|FL384759.1|FL384759
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211259829|gb|FL427120.1|FL427120
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211128586|gb|FL429558.1|FL429558
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|113701038|gb|EE678542.1|EE678542
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGTGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211482043|gb|FL394362.1|FL394362
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211111995|gb|FL388639.1|FL388639
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211439139|gb|FL388410.1|FL388410
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|5058599|gb|AI737075.1|AI737075
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211206901|gb|FL385654.1|FL385654
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
EST: gi|211101077|gb|FL442473.1|FL442473
EST:     GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAG                         GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG
genomic: GCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 15 (upstream exon), 38 (downstream exon)
Score: 19

CATCCCTTGTGCGCTACCGCTCCTCTCCCTTGGCAACGACGACTGGCGCCGCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG


Block sizes: 11 (upstream exon), 38 (downstream exon)
Score: 13

CATCCCTTGTGCGCTACCGCTCCTCTCCCTTGGCAACGACGACTGGCGCCGCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG


Block sizes: 16 (upstream exon), 38 (downstream exon)
Score: 23

CATCCCTTGTGCGCTACCGCTCCTCTCCCTTGGCAACGACGACTGGCGCCGCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG


Block sizes: 15 (upstream exon), 43 (downstream exon)
Score: 18

CATCCCTTGTGCGCTACCGCTCCTCTCCCTTGGCAACGACGACTGGCGCCGCCGCTGCCAGACTTCGCTGGGCATCTCGCCGGCGACGAGCTCCCACCAGgtaattccat ... agtgcaacagGATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG