Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGACCGCCGGAGGAGGGGGCTTCCTCGGCGGCGCGGACCGTTACCTGACTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactgtaataaatcgacgtgtttctctccggatttatgtcgacttgaggctcgttctgccgttcgttggaactgcttgggtcccctgcctgtgac...

Basic information

species Zea mays
transcript GRMZM2G031572_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211467471|gb|FL213482.1|FL213482
EST:     CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: gi|71441298|gb|DR822348.1|DR822348
EST:     CTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: gi|211469987|gb|FL213486.1|FL213486
EST:     CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTT
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTT
EST: gi|211467472|gb|FL213483.1|FL213483
EST:     CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: gi|31357650|gb|CD442007.1|CD442007
EST:     CTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: gi|211467470|gb|FL213481.1|FL213481
EST:     CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: gi|93011649|gb|EB637169.1|EB637169
EST:     CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: gi|211493121|gb|FL031303.1|FL031303
EST:     CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: gi|211493120|gb|FL031302.1|FL031302
EST:     CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: gi|211469990|gb|FL213489.1|FL213489
EST:     CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG                         GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGACCGCCGGAGGAGGGGGCTTCCTCGGCGGCGCGGACCGTTACCTGACTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactgtaataaatcgacgtgtttctctccggatttatgtcgacttgaggctcgttctgccgttcgttggaactgcttgggtcccctgcctgtgac

- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA