1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCCAAGGAGGCTGTGAGGAAGAAGGCCGTCATGGCATTACACCGGTTCTACCAGCGATCCTCCTCCTCCGTTTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcacttttccccttcatttttgtgctaaattcatgtttttatataactgaccgaaaccaacattgaatagctcataatgatcatgcatgagctaca...
species | Zea mays |
transcript | GRMZM2G031352_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCAGCGATCCTCCTCCTCCGTTTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTATGTGATAATGATCCAGGGGTAATGGGTGCAACTCTATGCCCCCTCEST: gi|87151996|gb|DY396785.1|DY396785
genomic: ACCAGCGATCCTCCTCCTCCGTTTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... tgctgtgtagAGGCTATGTGATAATGATCCAGGGGTAATGGGTGCAACTCTATGCCCCCTC
EST: ACCAGCGATCCTCCTCCTCCGTTTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTATGTGATAATGATCCAGGGGTAATGGGTGCAACTCTATGCCCCCTCEST: gi|18385147|gb|BM418346.1|BM418346
genomic: ACCAGCGATCCTCCTCCTCCGTTTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... tgctgtgtagAGGCTATGTGATAATGATCCAGGGGTAATGGGTGCAACTCTATGCCCCCTC
EST: ACCAGCGATCCTCCTCCTCCGTTTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTATGTGATAATGATCCAGGGGTAATGGGTGCAACTCTATGCCCCCTC
genomic: ACCAGCGATCCTCCTCCTCCGTTTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... tgctgtgtagAGGCTATGTGATAATGATCCAGGGGTAATGGGTGCAACTCTATGCCCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCAAGGAGGCTGTGAGGAAGAAGGCCGTCATGGCATTACACCGGTTCTACCAGCGATCCTCCTCCTCCGTTTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcacttttccccttcatttttgtgctaaattcatgtttttatataactgaccgaaaccaacattgaatagctcataatgatcatgcatgagctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC