Sequence
atgc intronic sequence ATGC exonic sequenceTGATGCAGAAGCTCTGCGCCGTCGACCCCAGCCTTATGACGAACAAGCAGAAGCTGGCGTTTTGGATCAACGTCTACAACTTCTGCGTGATGCATGTACTgtaagctgatcctctggttccatctcacgcgtagcggcctagcctgacgaaccattgcgtgaaggcagtgctgattttttatccgtcatggtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G030712_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g05480.1 (Oryza sativa), 5'ss of exon 4
-----TGATGCAGAAGCTCTGCGCCGTCGACCCCAGCCTTATGACGAACAAGCAGAAGCTGGCGTTTTGGATCAACGTCTACAACTTCTGCGTGATGCATGTACTgtaagctgatcctctggttccatctcacgcgtagcggcctagcctgacgaaccattgcgtgaaggcagtgctgattttttatccgtcatggtttcag
||||||||| ||| ||| || || || || || ||||||||||||||||||||||||| ||||| ||| |||||||||||||| | |||||||||| |||||||| | | | | ||| || | || | | |||| || | | | | | ||||||| ||
AATCTTGATGCAGAGGCTTTGCAATGTTGATCCAAGTTTTCTGACGAACAAGCAGAAGCTGGCGTTCTGGATTAACATCTACAACTTCTGCATAATGCATgtacagtaagctgccctgatcaacaaaacacactggtgatgaaataagc-actgcttcattcattgctaat-gcaagaaactgtactttacaatggttttag
upper sequence: GRMZM2G030712_T04 (Zea mays), 5'ss of exon 1
lower sequence: EFJ31980 (Selaginella moellendorffii), 5'ss of exon 2
-----TGATGCAGAAGCTCTGCGCCGTCGACCCCAGCCTTATGACGAACAAGCAGAAGCTGGCGTTTTGGATCAACGTCTACAACTTCTGCGTGATGCATGTACTgtaagctgatcctctggttccatctcacgcgtagcggcctagcctgacgaaccattgcgtgaaggcagtgctgattttttatccgtcatggtttcag--
|||| ||||| | ||||| | | |||||| ||||||||||||| |||||||| ||||| |||||| ||| ||||||||||| | | || | | ||| || || || | || | | | | ||| | | ||||||||| ||
AGTTTTGATAGGCAAGCTGGCGGGGGTCGATCTACAACATATGACTCGACAGCAGAAGCTGGCATTTTGGATTAACGTATACAACGCATGCATGATGCATgtaagtttttgtccggcttcgtgtttgtcttgtttttaat--tctcgctttacacccgactccact-------cgctcacact---tccgtcatgcttgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78113611|gb|DV532002.1|DV532002EST: AAGCTGGCGTTTTGGATCAACGTCTACAACTTCTGCGTGATGCATGTACT GCGTTTCTCCAGCACGGTTTGCCTCCGTCTCCGGAGAAGCTTCTTGCGCTG
genomic: AAGCTGGCGTTTTGGATCAACGTCTACAACTTCTGCGTGATGCATGTACTgtaagctgat ... atggtttcagGCGTTTCTCCAGCACGGTTTGCCTCCGTCTCCGGAGAAGCTTCTTGCGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGCAGAAGCTCTGCGCCGTCGACCCCAGCCTTATGACGAACAAGCAGAAGCTGGCGTTTTGGATCAACGTCTACAACTTCTGCGTGATGCATGTACTgtaagctgatcctctggttccatctcacgcgtagcggcctagcctgacgaaccattgcgtgaaggcagtgctgattttttatccgtcatggtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG