1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CACCGGGACCTCAAGCCCGAGAACTTCCTCTTCGCCAACAAGAAGGAGAACTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctccccggccaccgagatccgtccctgatttgggcggaccgctggctgcaattttggactttttcgtcgattcaggctggatccgtggggtgg...
species | Zea mays |
transcript | GRMZM2G030673_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCG GTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAGEST: gi|22542072|gb|BU092510.1|BU092510
genomic: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctc ... tcttttctagGTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
EST: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCG GTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAGEST: gi|148964672|gb|EE015635.2|EE015635
genomic: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctc ... tcttttctagGTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
EST: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCG GTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAGEST: gi|76287362|gb|DV026930.1|DV026930
genomic: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctc ... tcttttctagGTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
EST: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCG GTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAGEST: gi|29130476|gb|CB381180.1|CB381180
genomic: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctc ... tcttttctagGTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
EST: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCG GTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAGEST: gi|26559284|gb|CA831519.1|CA831519
genomic: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctc ... tcttttctagGTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
EST: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCG GTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAGEST: gi|31558101|gb|CD527313.1|CD527313
genomic: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctc ... tcttttctagGTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
EST: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCG GTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAGEST: gi|78090252|gb|DV518626.1|DV518626
genomic: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctc ... tcttttctagGTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
EST: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCG GTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
genomic: CTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctc ... tcttttctagGTGAAAAGTTTTCGGAAATTGTGGGAAGTCCATACTACATGGCTCCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCGGGACCTCAAGCCCGAGAACTTCCTCTTCGCCAACAAGAAGGAGAACTCGCCGCTCAAGGCCATCGACTTTGGTCTCTCCATCTTCTTCAAGCCCGgtaagagctccccggccaccgagatccgtccctgatttgggcggaccgctggctgcaattttggactttttcgtcgattcaggctggatccgtggggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgtccc