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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCGCCCAGGGCGCTCCCGCCGCCGCGCCTCTGCCGCCAGTTCTGGAAGTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatcggtcggaggaatctcggccccaatttctgctgcctcttcgctttcctttgatacttccggtggggatggtgatcaagctgagtgagatttgcgatttggtggtgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G030596_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030596_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g36840.3 (Oryza sativa), 5'ss of exon 1
TCACCGCCCAGGGCG--CTCCCGCCGCCGCGCCTCTGCCGCCAGTTCTGGAAGTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatcggtcgg-aggaatctcgg----ccccaatttctgctgcctcttcgctttcctttgatacttccggtgggg--------atgg--tgatcaagctgagtgagat----ttgcgatttggtg-----gtgcgtgcag
   || || ||| ||  |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||| |  |  |  ||||||| ||||  | | |  | | | || ||     |||| ||      || |||| ||||||| ||   | ||  |  | ||        | ||  |||  | ||||| ||| ||    |||||||| ||||     ||  ||||||
--TCCACCAAGGTCGCCCTCCCGGCGCCGCGCCTCTGCCGCCAGTTCTGGAAGTCGGGCGACTACGTCGTCGCCCAGCGCAACCCCGACGCCGATGCACCCGgtaagctaaggctagctaagcacctagggttctcccatttcgcttcgcttcttagctttccgtttggattttggtggaggcaagtttgacggtttgaagaggctgactgatatggggttgcgattcggtgctggtgtatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101395058|gb|EB819461.1|EB819461
EST:     TCCGGCGACTACGTCGTCGCGCGCCCGCAACCCCGATGTGGCCGGCCCCG                         GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
genomic: TCCGGCGACTACGTCGTCGCGCGCC-GCAACCCCGATGTGGCCGGCCCCGgtaggctatc ... gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
EST: gi|76286071|gb|DV025639.1|DV025639
EST:     GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCG                         GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
genomic: GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatc ... gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
EST: gi|91867858|gb|EB399825.1|EB399825
EST:     GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCG                         GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
genomic: GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatc ... gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
EST: gi|101391099|gb|EB817483.1|EB817483
EST:     TCCGGCGACTACGTCGTCGCGCGCCGCAACCCCCGATGTGGCCGGCCCCG                         GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCCATGCGA
genomic: TCCGGCGACTACGTCGTCGCGCGCCGCAACCCC-GATGTGGCCGGCCCCGgtaggctatc ... gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
EST: gi|78121768|gb|DV540152.1|DV540152
EST:     GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCG                         GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
genomic: GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatc ... gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
EST: gi|78111592|gb|DV529989.1|DV529989
EST:     GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCG                         GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
genomic: GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatc ... gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
EST: gi|78114931|gb|DV533319.1|DV533319
EST:     GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCG                         GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
genomic: GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatc ... gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
EST: gi|78075870|gb|DV504304.1|DV504304
EST:     GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCG                         GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA
genomic: GTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatc ... gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGA