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GTGCTGGGCTGCCGAGCGGAGCTCCAGCTCGTTTGTCCTCTCGGCTCCTGCGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcggacaagattttcgtttccgcagatttggctactctactgagcgccagtgacttcctttactagtttggtttgtgtggagtatggtgctta...
species | Zea mays |
transcript | GRMZM2G029573_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211087675|gb|FL052572.1|FL052572
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518598|gb|FL052566.1|FL052566
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTKCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211516228|gb|FL052545.1|FL052545
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211516227|gb|FL052544.1|FL052544
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|148969434|gb|EE020234.2|EE020234
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211087674|gb|FL052571.1|FL052571
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211516229|gb|FL052546.1|FL052546
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|31361816|gb|CD446173.1|CD446173
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211516233|gb|FL052550.1|FL052550
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211087677|gb|FL052574.1|FL052574
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTTGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|89248122|gb|DY619908.1|DY619908
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518588|gb|FL052556.1|FL052556
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211087672|gb|FL052569.1|FL052569
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518587|gb|FL052555.1|FL052555
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCGAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGGCCTGCAGAGGGCCTGCGTTGCGGATGATGGAGEST: gi|211516232|gb|FL052549.1|FL052549
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACT-GGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: GACTTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211289807|gb|FL254557.1|FL254557
genomic: GAC-TGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518594|gb|FL052562.1|FL052562
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518589|gb|FL052557.1|FL052557
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|71764310|gb|DR962247.1|DR962247
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211087676|gb|FL052573.1|FL052573
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211087673|gb|FL052570.1|FL052570
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211516230|gb|FL052547.1|FL052547
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211287670|gb|FL254548.1|FL254548
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518600|gb|FL052568.1|FL052568
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGTGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|31355937|gb|CD440294.1|CD440294
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211516235|gb|FL052552.1|FL052552
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211516231|gb|FL052548.1|FL052548
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518596|gb|FL052564.1|FL052564
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518597|gb|FL052565.1|FL052565
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211518593|gb|FL052561.1|FL052561
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGEST: gi|211287675|gb|FL254553.1|FL254553
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGGGCTGCCGAGCGGAGCTCCAGCTCGTTTGTCCTCTCGGCTCCTGCGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcggacaagattttcgtttccgcagatttggctactctactgagcgccagtgacttcctttactagtttggtttgtgtggagtatggtgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG