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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGGGCTGCCGAGCGGAGCTCCAGCTCGTTTGTCCTCTCGGCTCCTGCGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcggacaagattttcgtttccgcagatttggctactctactgagcgccagtgacttcctttactagtttggtttgtgtggagtatggtgctta...

Basic information

species Zea mays
transcript GRMZM2G029573_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211516234|gb|FL052551.1|FL052551
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211087675|gb|FL052572.1|FL052572
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518598|gb|FL052566.1|FL052566
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTKCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211516228|gb|FL052545.1|FL052545
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211516227|gb|FL052544.1|FL052544
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|31355937|gb|CD440294.1|CD440294
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211087674|gb|FL052571.1|FL052571
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211516229|gb|FL052546.1|FL052546
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|31361816|gb|CD446173.1|CD446173
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211516233|gb|FL052550.1|FL052550
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211087677|gb|FL052574.1|FL052574
EST:     CGACTGGCCTCCGGCAAAGTTGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|89248122|gb|DY619908.1|DY619908
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|148969434|gb|EE020234.2|EE020234
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518588|gb|FL052556.1|FL052556
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211087672|gb|FL052569.1|FL052569
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518587|gb|FL052555.1|FL052555
EST:     CGACTGGCCTCCGGCGAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGGCCTGCAGAGGGCCTGCGTTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACT-GGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211516232|gb|FL052549.1|FL052549
EST:     GACTTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: GAC-TGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211289807|gb|FL254557.1|FL254557
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|71764310|gb|DR962247.1|DR962247
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518594|gb|FL052562.1|FL052562
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518589|gb|FL052557.1|FL052557
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211087676|gb|FL052573.1|FL052573
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211087673|gb|FL052570.1|FL052570
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211516230|gb|FL052547.1|FL052547
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211287670|gb|FL254548.1|FL254548
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518600|gb|FL052568.1|FL052568
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGTGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211516235|gb|FL052552.1|FL052552
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211516231|gb|FL052548.1|FL052548
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518596|gb|FL052564.1|FL052564
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518597|gb|FL052565.1|FL052565
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211518593|gb|FL052561.1|FL052561
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
EST: gi|211287675|gb|FL254553.1|FL254553
EST:     CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAG                         GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG
genomic: CGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcg ... ttccatgcagGTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCTGGGCTGCCGAGCGGAGCTCCAGCTCGTTTGTCCTCTCGGCTCCTGCGACTGGCCTCCGGCAAAGTGGGAGCCGCGTCCTCAGCATCCGTGCCAAGgtgagcgtcggacaagattttcgtttccgcagatttggctactctactgagcgccagtgacttcctttactagtttggtttgtgtggagtatggtgctta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG