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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGTGGCCATCGGGGACTTCGCGCTCGACCTCGCCGCCGTCGCCGACGCGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctctgctcctcaaccctttgatttgttttgattgctctgcagtgacggacggacggatggtatgagcttgattttagcttctccgactcgtga...

Basic information

species Zea mays
transcript GRMZM2G029566_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029566_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g10310.1 (Oryza sativa), 5'ss of exon 1
CGCGGTGGCCATCGGGGACTTCGCGCTCGACCTCGCCGCCGTCGCCGACGCGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctctgct--cctcaaccctttgatttgttttgattgctctgca--gtgacggacggacggatggta---tgagcttgattttagcttctccgactcgtga--------------------------------------------------------------------------------------
 || || |||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||   ||||||| |||||| ||||||| |||||| |   | ||||   ||| | |    | |  |    |  | |   ||    | |   ||    | | ||||    | |||||      |  ||   || | ||                                                                                         
GGCCGTCGCCATCGGGGACTTCGCGCTCGACCTCGCCGCCGTCTCCGACGCGGGCCTCTTCCACGGGCCCCTCCTCTCCGCCTCCCCCTGCTTCCGCCAGgtccgcaccctgcctaccttacctaccttaccttacctactcgtcttgtgttgcggttgatctgctggtggtgagctaagcttagcagcaatttgcgcggcgcggagattggagatttgggtggttgattccactgtgatttttggtggttacaagtagtagtaatttttagatttgtttcgtgtgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211277946|gb|FK998815.1|FK998815
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211061692|gb|FK998762.1|FK998762
EST:     CGNGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTTCCTTGGGGATGGGGCCGGCCGGGCGTGGAGGGA
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTT-C-TTGGGGATGGG-CCGGCCGG-CGTGGAGGGA
EST: gi|211274318|gb|FK998785.1|FK998785
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGARGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|71328229|gb|DR800748.1|DR800748
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211274322|gb|FK998789.1|FK998789
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|149044247|gb|EE047493.2|EE047493
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211277951|gb|FK998820.1|FK998820
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211274317|gb|FK998784.1|FK998784
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|29577168|gb|CB617280.1|CB617280
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211061689|gb|FK998759.1|FK998759
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|149083775|gb|EE173140.2|EE173140
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272515|gb|FK998777.1|FK998777
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|149101399|gb|EE187518.2|EE187518
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148969714|gb|EE020586.2|EE020586
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272511|gb|FK998773.1|FK998773
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTGTCTTGGGGATGGGCCGACCGGCGTTGGAGGGAGG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGT-TCTTGGGGATGGGCCGGCCGGCGT-GGAGGGAGG
EST: gi|211277944|gb|FK998813.1|FK998813
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|60348819|gb|DN215792.1|DN215792
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211061694|gb|FK998764.1|FK998764
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272509|gb|FK998771.1|FK998771
EST:     CGGGGCTCTTCGACGGGCC-GCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGG
EST: gi|211277953|gb|FK998822.1|FK998822
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGC
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGC
EST: gi|211276144|gb|FK998808.1|FK998808
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211274329|gb|FK998796.1|FK998796
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272505|gb|FK998767.1|FK998767
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|149004521|gb|EE039090.2|EE039090
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276140|gb|FK998804.1|FK998804
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272513|gb|FK998775.1|FK998775
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276135|gb|FK998799.1|FK998799
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|149082178|gb|EE171359.2|EE171359
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272512|gb|FK998774.1|FK998774
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211277948|gb|FK998817.1|FK998817
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|91052883|gb|EB163301.1|EB163301
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148990772|gb|EE032185.2|EE032185
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148932701|gb|EC876670.2|EC876670
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276139|gb|FK998803.1|FK998803
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276136|gb|FK998800.1|FK998800
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148940815|gb|EC885642.2|EC885642
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148964333|gb|EC905725.2|EC905725
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211061690|gb|FK998760.1|FK998760
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211274321|gb|FK998788.1|FK998788
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276134|gb|FK998798.1|FK998798
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|78124353|gb|DV542737.1|DV542737
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAA                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211061695|gb|FK998765.1|FK998765
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAAGGAAGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148956082|gb|EC901838.2|EC901838
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211277952|gb|FK998821.1|FK998821
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211274320|gb|FK998787.1|FK998787
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGANGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148955041|gb|EC900548.2|EC900548
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272519|gb|FK998781.1|FK998781
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148983240|gb|EE029206.2|EE029206
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276145|gb|FK998809.1|FK998809
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211274316|gb|FK998783.1|FK998783
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276147|gb|FK998811.1|FK998811
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGARGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211277950|gb|FK998819.1|FK998819
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGACGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272508|gb|FK998770.1|FK998770
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|149076833|gb|EE165488.2|EE165488
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|149042087|gb|EE047065.2|EE047065
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276137|gb|FK998801.1|FK998801
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276141|gb|FK998805.1|FK998805
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148949167|gb|EC894603.2|EC894603
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211274325|gb|FK998792.1|FK998792
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|71421618|gb|DR805518.1|DR805518
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272517|gb|FK998779.1|FK998779
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148941367|gb|EC886277.2|EC886277
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148959990|gb|EE153229.2|EE153229
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|76920587|gb|DV168250.1|DV168250
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272514|gb|FK998776.1|FK998776
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|149009361|gb|EE041411.2|EE041411
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|148946154|gb|EC891448.2|EC891448
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272510|gb|FK998772.1|FK998772
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272518|gb|FK998780.1|FK998780
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211272507|gb|FK998769.1|FK998769
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211276146|gb|FK998810.1|FK998810
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211274327|gb|FK998794.1|FK998794
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGA
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGA
EST: gi|211276138|gb|FK998802.1|FK998802
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211277956|gb|FK998825.1|FK998825
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|211277943|gb|FK998812.1|FK998812
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
EST: gi|89764162|gb|DY691069.1|DY691069
EST:     CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG
genomic: CGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 130

CGCGGTGGCCATCGGGGACTTCGCGCTCGACCTCGCCGCCGTCGCCGACGCGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 159

CGCGGTGGCCATCGGGGACTTCGCGCTCGACCTCGCCGCCGTCGCCGACGCGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 85

CGCGGTGGCCATCGGGGACTTCGCGCTCGACCTCGCCGCCGTCGCCGACGCGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 320

CGCGGTGGCCATCGGGGACTTCGCGCTCGACCTCGCCGCCGTCGCCGACGCGGGGCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... ctgcatgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG