1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCTCGTCGGCAACGCTAGGGTTTTTGGCTACTCCGCCTCCGCTCTCCCCCCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagagaaattcgtgttattgtcttgatttatagtgttctactcgtgtttgatttcgctgattttattttcttcttcttctgttgctgttatgcag
species | Zea mays |
transcript | GRMZM2G029559_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|56382464|gb|CV985133.1|CV985133
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|211221752|gb|FL290081.1|FL290081
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|211045448|gb|FL056741.1|FL056741
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|32942861|gb|CF047680.1|CF047680
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGNTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|211045450|gb|FL056743.1|FL056743
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|32908341|gb|CF013154.1|CF013154
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|211045447|gb|FL056740.1|FL056740
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|211045445|gb|FL056738.1|FL056738
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|211045441|gb|FL056734.1|FL056734
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|31406016|gb|CD484748.1|CD484748
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGG-GCTGGTAGCGG-GAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|74237946|gb|DT645860.1|DT645860
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|31359821|gb|CD444178.1|CD444178
genomic: CGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: GCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTEST: gi|211045444|gb|FL056737.1|FL056737
genomic: GCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
EST: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAAT ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
genomic: CCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagag ... tgttatgcagATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCGTCGGCAACGCTAGGGTTTTTGGCTACTCCGCCTCCGCTCTCCCCCCTGCTGCGCGCTACTCGCCCGATCTCGCGGTGCTGGTAGCGGTGAAAATgtagcgagagaaattcgtgttattgtcttgatttatagtgttctactcgtgtttgatttcgctgattttattttcttcttcttctgttgctgttatgcag
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